| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,981,375 – 11,981,453 |
| Length | 78 |
| Max. P | 0.999677 |
| Location | 11,981,375 – 11,981,453 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 70.65 |
| Shannon entropy | 0.52027 |
| G+C content | 0.39901 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -15.70 |
| Energy contribution | -16.38 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.29 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 4.17 |
| SVM RNA-class probability | 0.999677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11981375 78 + 22422827 AUUUCUAGAGUUUCACCCUUUUGAUAACUUAAAUACUCGCCAUUGCUUUUUGUAA---------AGCAAUGGCAAGUGGUUUUAUAG .......((((((((......))).)))))...((((.(((((((((((....))---------))))))))).))))......... ( -23.60, z-score = -4.85, R) >droEre2.scaffold_4690 3901596 78 - 18748788 ---------AGUUCAUGCUGUUGUUAACAUUCACACUCGCCAUUGCUUUUUUUAACGUUGGGGAAGCAAUGGCAACGGUUCGCACUU ---------(((.(..((((((((........))....((((((((((((((.......))))))))))))))))))))..).))). ( -23.70, z-score = -2.85, R) >droYak2.chrX 19901774 79 - 21770863 --------GAGUUCAUGCUGUUGUUAACAUUCACACUCGCCAUUGCUUUCUUUGGUGACGGAAAAGCAAUGGCAUCGGCUUGCAAAG --------..((....((((.(((........)))...(((((((((((.((((....)))))))))))))))..))))..)).... ( -26.40, z-score = -2.85, R) >droSec1.super_45 201084 87 - 245362 AUUUCUAGAGUUUCAUGGUUUUGUUGACUCAAAUACUCGCCAUUGCUUUUUGUAAAGACAUGAAAGCAAUGGCAACGGAUUGCAAAG ...(((.((((.....((((.....)))).....))))(((((((((((((((....))).))))))))))))...)))........ ( -26.50, z-score = -3.43, R) >droSim1.chrX 9241159 87 + 17042790 AUUUCUCGAGUUUCAUGCUUUUGUUGACUCAAAUACUCGCCAUUGCUUUUUGUAACGACGUGAAAGCAAUGGCAACGGAUUGCAAAG ...(((.(((((.((......))..)))))........(((((((((((((((....))).))))))))))))...)))........ ( -24.70, z-score = -2.50, R) >consensus AUUUCU_GAGUUUCAUGCUUUUGUUAACUUAAAUACUCGCCAUUGCUUUUUGUAACGACGGGAAAGCAAUGGCAACGGAUUGCAAAG ......................................((((((((((((...........)))))))))))).............. (-15.70 = -16.38 + 0.68)
| Location | 11,981,375 – 11,981,453 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 70.65 |
| Shannon entropy | 0.52027 |
| G+C content | 0.39901 |
| Mean single sequence MFE | -22.21 |
| Consensus MFE | -14.98 |
| Energy contribution | -15.78 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.78 |
| SVM RNA-class probability | 0.999304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11981375 78 - 22422827 CUAUAAAACCACUUGCCAUUGCU---------UUACAAAAAGCAAUGGCGAGUAUUUAAGUUAUCAAAAGGGUGAAACUCUAGAAAU ..........(((((((((((((---------((....))))))))))))))).((((((((.(((......))))))).))))... ( -25.20, z-score = -5.59, R) >droEre2.scaffold_4690 3901596 78 + 18748788 AAGUGCGAACCGUUGCCAUUGCUUCCCCAACGUUAAAAAAAGCAAUGGCGAGUGUGAAUGUUAACAACAGCAUGAACU--------- ..((((......((((((((((((...............)))))))))))).(((........)))...)))).....--------- ( -21.06, z-score = -2.37, R) >droYak2.chrX 19901774 79 + 21770863 CUUUGCAAGCCGAUGCCAUUGCUUUUCCGUCACCAAAGAAAGCAAUGGCGAGUGUGAAUGUUAACAACAGCAUGAACUC-------- ..............((((((((((((...........))))))))))))((((....(((((......)))))..))))-------- ( -22.80, z-score = -2.21, R) >droSec1.super_45 201084 87 + 245362 CUUUGCAAUCCGUUGCCAUUGCUUUCAUGUCUUUACAAAAAGCAAUGGCGAGUAUUUGAGUCAACAAAACCAUGAAACUCUAGAAAU ............(((((((((((((..(((....))).)))))))))))))......((((...((......))..))))....... ( -20.40, z-score = -2.38, R) >droSim1.chrX 9241159 87 - 17042790 CUUUGCAAUCCGUUGCCAUUGCUUUCACGUCGUUACAAAAAGCAAUGGCGAGUAUUUGAGUCAACAAAAGCAUGAAACUCGAGAAAU ............(((((((((((((...((....))..)))))))))))))...(((((((...((......))..))))))).... ( -21.60, z-score = -1.70, R) >consensus CUUUGCAAUCCGUUGCCAUUGCUUUCACGUCGUUACAAAAAGCAAUGGCGAGUAUUUAAGUUAACAAAAGCAUGAAACUC_AGAAAU ............(((((((((((((.............))))))))))))).................................... (-14.98 = -15.78 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:07 2011