| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,974,326 – 11,974,424 |
| Length | 98 |
| Max. P | 0.855443 |
| Location | 11,974,326 – 11,974,424 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 69.17 |
| Shannon entropy | 0.63787 |
| G+C content | 0.45452 |
| Mean single sequence MFE | -22.39 |
| Consensus MFE | -11.67 |
| Energy contribution | -11.87 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11974326 98 - 22422827 ------CGCACUC-AUUCCUGCACUGCGUUCUCGUUG-CAGCGAUUUUCAACGUUUA-----GUCUGUUGCAUCAUUUAUCAUGUGAAAUGCGCCAGACACAAC---AGCAACU--- ------.((....-..(((((((..(((....)))))-))).))........(((..-----(((((.((((((((.......))))..)))).)))))..)))---.))....--- ( -25.70, z-score = -1.50, R) >droSim1.chrX 9236231 100 - 17042790 ------CGCACUC-AUUCCUGCACUGCGUUCUCAUUG-CAUCGAUUUUCAACAUUUA-----GUCUGUUGCAUCAUUUAUCAUGUGAAAUGCGCCAGACACAAC-AGAGCAACU--- ------....(((-.....((((.((......)).))-)).................-----(((((.((((((((.......))))..)))).))))).....-.))).....--- ( -19.50, z-score = -0.11, R) >droSec1.super_53 190030 100 - 190754 ------CGAACUC-AUUUCUGCACUGCGUUCUCGUUG-CAGCGAUUUUCAACGUUUA-----GUCUGUUGCAUCAUUUAUCAUGUGAAAUGCGCCAGACACAAC-AGAGCAACU--- ------.((((.(-(.........)).))))..((((-(((((........))))..-----(((((.((((((((.......))))..)))).))))).....-...))))).--- ( -24.80, z-score = -0.67, R) >droYak2.chrX 19894051 98 + 21770863 ------CGCACUC-AUUCUUGCACUGCGUCCUCGUUG-CAGCUAUUUUCAACGUUUA-----GUCUGUUGCAUCAUUUAUCAUGUGAAAUGCGCCAGACACAAC---AGCAACU--- ------.......-....((((.(((((.......))-)))...........(((..-----(((((.((((((((.......))))..)))).)))))..)))---.))))..--- ( -23.00, z-score = -1.02, R) >droEre2.scaffold_4690 3894455 98 + 18748788 ------CGCACUC-AUUCCUGCACUGCGUCCUCGUUG-CAGCUAUUUUCAACGUUUA-----GUCUGUUGCAUCAUUUAUCAUGUGAAAUGCGCCAGACACAAC---AGCAACU--- ------.((....-....(((((..(((....)))))-)))...........(((..-----(((((.((((((((.......))))..)))).)))))..)))---.))....--- ( -24.20, z-score = -1.56, R) >droAna3.scaffold_13335 1946320 101 + 3335858 ------UCCCUUC-AUUCCGGCAUGCCGUGCUCGUUG-CAGCGAUUUUCAACGUUUA-----GUCUGUUGCAUCAUUUAUCAUGUGAAAUGCGCCAGACACAACAAGAGCAGUA--- ------.......-....(((....)))(((((((((-.((((........))))..-----(((((.((((((((.......))))..)))).))))).))))..)))))...--- ( -27.00, z-score = -1.47, R) >dp4.chrXL_group1a 2695218 104 - 9151740 CGCUUCUGUACUUGAAUUCAGAGCAUGGAGCAUGCUG-CAGCGAUUUUCAUCGUUUA-----GUUUUGUGCAUCAUUUAUCAUGUGAAGUGCGCCAGACACAACAACAGC------- .((((((((.((.(....))).))).)))))..((((-.((((((....))))))..-----((((.(((((((((.......))))..))))).)))).......))))------- ( -27.60, z-score = -0.24, R) >droPer1.super_12 1799019 104 + 2414086 CGCUUCUGUACUUGAAUUCAGAGCAUGGAGCAUGCUG-CAGCGAUUUUCAUCGUUUA-----GUUUUGUGCAUCAUUUAUCAUGUGAAGUGCGCCAGACACAACAACAGC------- .((((((((.((.(....))).))).)))))..((((-.((((((....))))))..-----((((.(((((((((.......))))..))))).)))).......))))------- ( -27.60, z-score = -0.24, R) >droWil1.scaffold_180777 3717452 106 - 4753960 ----CAAAUACAUACAUACAAACAGACAUCGAUUUCA-UGCCGAUUUUCAGCAUUUAGAGUCGUCUGUGGCAUCAUUUAUCAUGUGAAAUGCGGCAGACAUAAC---AGCCAAU--- ----....................(((.((......(-(((.(.....).))))...)))))((((((.(((((((.......))))..))).)))))).....---.......--- ( -23.20, z-score = -1.70, R) >droVir3.scaffold_12928 3474940 93 - 7717345 ----------CUUCCCCCAGUGAAUCUGCCAUCUCCAACCCCAAGC---AACGUUUA-----GUCUGCUGCAUCAUUUAUCAUGUGAAAUGCGCCAGACACAAC---AGCCAAU--- ----------.......(((.....)))..................---...(((..-----(((((.((((((((.......))))..)))).)))))..)))---.......--- ( -14.90, z-score = -0.80, R) >droGri2.scaffold_15081 19689 99 + 4274704 ----------CCUUCCCCUACAAAUUCACACUUCCAACCCCCGCGCUAGAGCGUUUA-----GUCUGCUGCAUCAUUUAUCAUGUGAAAUACGCCAGACACAAC---AGCCAAUGAG ----------...............(((..............((((....))))...-----(((((.((..((((.......))))....)).))))).....---......))). ( -13.10, z-score = -0.52, R) >droMoj3.scaffold_6359 22227 88 - 4525533 ------------------CAUCCCCCGGCCCUGCUCAGCUCCCCCUUUUAACGUUUA-----GUCUGCUGCAUCAUUUAUCAUGUGAAAUGCGCCAGACACAAC---AGCCAAU--- ------------------........(((...((...)).............(((..-----(((((.((((((((.......))))..)))).)))))..)))---.)))...--- ( -18.10, z-score = -1.85, R) >consensus ______CGCACUC_AUUCCAGCACUGCGUCCUCGUUG_CAGCGAUUUUCAACGUUUA_____GUCUGUUGCAUCAUUUAUCAUGUGAAAUGCGCCAGACACAAC___AGCAACU___ ..............................................................(((((.((((((((.......))))..)))).))))).................. (-11.67 = -11.87 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:05 2011