| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,963,275 – 11,963,373 |
| Length | 98 |
| Max. P | 0.517152 |
| Location | 11,963,275 – 11,963,373 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 96.60 |
| Shannon entropy | 0.04685 |
| G+C content | 0.48299 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -16.26 |
| Energy contribution | -16.04 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11963275 98 + 22422827 AUUCCUUUUCGACAUUUCCCUUUUGUUUUACUCGCUGCGGAGCUGACCUCCAGCUCCUCGAUUUUCUCAUCCCACUCCUUCGGCAGAGUCGCUUACUU .........((((...........(.....)...(((((((((((.....))))))).(((..................))))))).))))....... ( -21.27, z-score = -2.53, R) >droSim1.chrX 9226847 98 + 17042790 AUUCCUUUUCGACAUUUCCCUUUUGUUUUACUCGCUGCGGAGCUGACCUCCUGCUCCUCGAUUUCAUCAUCCCACUCCUUUGGCAGAGUCGCUUACUU .........((((...........(.....)...(((((((((.........)))))..(((...)))..............)))).))))....... ( -15.90, z-score = -0.74, R) >droSec1.super_53 179968 98 + 190754 AUUCCUUUUCGACAUUUCCCUUUUGUUUUACUCGCUGCGGAGCUGACCUCCUGCUCCUCGAUUUCAUCAUCCCACUCCUUCGGCAGAGUCGUUUACUU .........((((...........(.....)...(((((((((.........))))).(((..................))))))).))))....... ( -16.97, z-score = -1.17, R) >consensus AUUCCUUUUCGACAUUUCCCUUUUGUUUUACUCGCUGCGGAGCUGACCUCCUGCUCCUCGAUUUCAUCAUCCCACUCCUUCGGCAGAGUCGCUUACUU .........((((...........(.....)...(((((((((.........))))).(((..................))))))).))))....... (-16.26 = -16.04 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:02 2011