| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,962,577 – 11,962,656 |
| Length | 79 |
| Max. P | 0.785947 |
| Location | 11,962,577 – 11,962,656 |
|---|---|
| Length | 79 |
| Sequences | 5 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 93.61 |
| Shannon entropy | 0.11316 |
| G+C content | 0.45091 |
| Mean single sequence MFE | -23.86 |
| Consensus MFE | -18.94 |
| Energy contribution | -19.18 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11962577 79 + 22422827 GCAAAUGAAGGUGUUCCGUCAAAGGAAACAUGCUCGUCGUUUUCACAAUACAUCACAGCGUGAAAAUG--GAGAAUGGCCA .........(((.((((......)))).(((.(((..(((((((((.............)))))))))--))).)))))). ( -20.12, z-score = -1.23, R) >droSim1.chrX 9226157 79 + 17042790 GCAAAUGACGGUGUUCCGUCAAAGGCAACAUGCUCGAUGUUUUCACAAUACAUCACAGCGUGAAAAUG--GAGAAUGGCCA .....((((((....))))))..(((..(((.((((((((.........)))))....(((....)))--))).)))))). ( -24.20, z-score = -2.11, R) >droSec1.super_53 179294 79 + 190754 GCAAAUGAAGGUGUUCCGUCAAAGGCAACAUGCUCGACGUUUUCACAAUACAUCACAGCGUGAAAAUG--GAGAAUGGCCA .....(((.((....)).)))..(((..(((.(((..(((((((((.............)))))))))--))).)))))). ( -19.72, z-score = -0.85, R) >droYak2.chrX 19881879 81 - 21770863 GCAAAUAAAGGUGUUCCGUGAAAGGAAACAUGCUCGGCGUUUUCACAAUAUAUCACAGCGUGAAAAUGUGGAGGAUGGCCA .........(((.((((......)))).(((.(((.((((((((((.............)))))))))).))).)))))). ( -28.52, z-score = -3.86, R) >droEre2.scaffold_4690 3882863 79 - 18748788 GCAAAUGAAGGUGUUCCGUCAAAGGAAACAUGCUCGGCGUUUUCACAAUAUAUCACAGCGUGAAAAUG--GAGCAUGGCCA .........(((.((((......)))).(((((((..(((((((((.............)))))))))--)))))))))). ( -26.72, z-score = -3.21, R) >consensus GCAAAUGAAGGUGUUCCGUCAAAGGAAACAUGCUCGACGUUUUCACAAUACAUCACAGCGUGAAAAUG__GAGAAUGGCCA .........(((.((((......)))).(((.(((..(((((((((.............)))))))))..))).)))))). (-18.94 = -19.18 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:01 2011