| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,951,274 – 11,951,366 |
| Length | 92 |
| Max. P | 0.755491 |
| Location | 11,951,274 – 11,951,366 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 83.15 |
| Shannon entropy | 0.30318 |
| G+C content | 0.47967 |
| Mean single sequence MFE | -25.74 |
| Consensus MFE | -15.43 |
| Energy contribution | -15.82 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11951274 92 + 22422827 CUAAUGAGCCGCAAUCGAUCAACUUUGCUGAU----------AUGUGGCUCACCCUAAUGCGUAUAUAUCCUCCUCACUGUCGUGCACACUGUGCAUUUGGG ....(((((((((....((((.......))))----------.)))))))))(((.((((((.............((.(((.....))).)))))))).))) ( -24.61, z-score = -1.88, R) >droAna3.scaffold_13335 1917770 87 - 3335858 CUAAUGAGCCGCAAUCGAU-AACUUCGCUGAU----------AUGUGGCACACCCUAAUGCUCAUAUAUCCUACUCACUGUCU----CUGUGUGAGUGUAGG ....((.((((((((((..-........))))----------.)))))).)).((((.((((((((((....((.....))..----.)))))))))))))) ( -23.40, z-score = -2.10, R) >droEre2.scaffold_4690 3874497 98 - 18748788 CUAAUGAGCCGCAAUCGAUCAACUUUGCUGAUGUGAUAUGUGAUGUGGCUCACCCUAAUGCGUAUA---CUCGCAUAUCCUCCUG-AUGCGGUGUAUCUGGG ....(((((((((.(((.......(..(....)..)....))))))))))))(((....(.(((((---(.(((((.........-)))))))))))).))) ( -30.20, z-score = -2.25, R) >droYak2.chrX 19871290 87 - 21770863 CUAAUGAGCCGCAAUCGAUCAACUUUGCUGAU----------AUGUGGCUCACCCUAAUGCGUAUAUAUCCUCCUCACUGUCG-----UCUGUGUAUCUGGG ....(((((((((....((((.......))))----------.)))))))))(((....(.(((((((..(..(.....)..)-----..)))))))).))) ( -22.20, z-score = -2.21, R) >droSec1.super_53 167662 92 + 190754 CUAAUGAGCCGCAAUCGAUCAACUUUGCUGAU----------AUGUGGCUCACCCUAAUGCGUAUAUAUCCUCCUCACUGUCGUGCACAGUGUGCAUCUGGG ....(((((((((....((((.......))))----------.)))))))))(((..(((((.............((((((.....)))))))))))..))) ( -30.11, z-score = -3.21, R) >droSim1.chrX 9216719 92 + 17042790 CUAAUGAGCCGCAAUCGAUCAACUUUGCUGAU----------AUGUGGCUCACCCUAAUGCGUAUAUAUCCUCCUCACUGUCGUGCACGCUGUGCAUCUGGG ....(((((((((....((((.......))))----------.)))))))))(((..(((((.............(((....)))(.....))))))..))) ( -23.90, z-score = -1.26, R) >consensus CUAAUGAGCCGCAAUCGAUCAACUUUGCUGAU__________AUGUGGCUCACCCUAAUGCGUAUAUAUCCUCCUCACUGUCGUG_ACACUGUGCAUCUGGG ....(((((((((((((...........))))...........)))))))))(((..(((((((..........................)))))))..))) (-15.43 = -15.82 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:01 2011