| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,112,821 – 11,112,917 |
| Length | 96 |
| Max. P | 0.752876 |
| Location | 11,112,821 – 11,112,917 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.98 |
| Shannon entropy | 0.50288 |
| G+C content | 0.61019 |
| Mean single sequence MFE | -40.82 |
| Consensus MFE | -18.21 |
| Energy contribution | -18.04 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11112821 96 - 23011544 ---------------------UGCCAGGAUCCACGCCCACUACACGAGCGGAGAUG---UGGUCUAUCACACAAUGCCGCACUUUUGGACGGGCGUGGGCUUCUGUCCCGCCGGACGCAU ---------------------(((.(((((((((((((.(((...(.((((...((---((........))))...)))).)...)))..))))))))).))))((((....))))))). ( -40.00, z-score = -2.25, R) >droSim1.chr2L 10912371 96 - 22036055 ---------------------CGCCAGGAUCCACGCCCACUACACGAGCGGAGAUG---UGGUCUAUCACACAAUGCCGCACUUCUGGACGGGCGUGGGCUUCUGUCCGGCCGGACGGAU ---------------------.....((.(((((((((.(((...(.((((...((---((........))))...)))).)...)))..)))))))))))(((((((....))))))). ( -41.20, z-score = -2.05, R) >droSec1.super_3 6514140 96 - 7220098 ---------------------CGCCAGGAUCCACGCCCACUACACGAGCGGAGAUG---UGGUCUAUCACACAAUGCCGCACUUCUGGACGGGCGUGGGCUUCUGUCCAGCCGGACGGAU ---------------------.....((.(((((((((.(((...(.((((...((---((........))))...)))).)...)))..)))))))))))(((((((....))))))). ( -40.70, z-score = -2.26, R) >droYak2.chr2L 7508758 96 - 22324452 ---------------------CGCCAGGAUCCACGCCCACUACACCAGCGGGGAUG---UGGUCUAUCACACAAUGCCGCACUUCUGGACGGGCGUGGGCUUCUGUCCUGCCGGACGGAU ---------------------.....((.(((((((((.(((.....((((.(.((---((........)))).).)))).....)))..)))))))))))(((((((....))))))). ( -41.40, z-score = -2.03, R) >droEre2.scaffold_4929 12309508 96 + 26641161 ---------------------CGCCAGGAUCCACGCCCACUACACCAGCGGGGAUG---UGGUCUAUCACACAAUGCCGCACUUCUGGACGGGCGUGGGCUUCUGUCCUGCCGGACGGAU ---------------------.....((.(((((((((.(((.....((((.(.((---((........)))).).)))).....)))..)))))))))))(((((((....))))))). ( -41.40, z-score = -2.03, R) >droAna3.scaffold_12916 12237573 99 - 16180835 ---------------------CGCCAAGAUCCACGGCCAUUAUACCAGCGGGGAUGCUCCAGUCUAUCAUCCACUUCCGCACUUUUGGACGGGCGUGGGCUUCUGCCCCGCCGGGUCGAU ---------------------......(((((.((.(((........(((((((((...........)))))....)))).....))).))((((.((((....)))))))))))))... ( -37.82, z-score = -1.20, R) >dp4.chr4_group3 6463383 99 - 11692001 ------------------GGCCGGACGCGUCCACGCCCACUACACCAGCGGGGAUG---UGGUCUACCAUCCUUUGUCGCACUUCUGGACGGGCGUGGGCUUCUGUCCAGCCGGUGACAU ------------------(((.(((((.((((((((((...........(((((((---.(.....)))))))).(((.((....)))))))))))))))...))))).)))(....).. ( -47.30, z-score = -2.63, R) >droPer1.super_1 7954897 99 - 10282868 ------------------GGCCGGACGCGUCCACGCCCACUACACCAGCGGGGAUG---UGGUCUACCAUCCGUUGUCGCACUUCUGGACGGGCGUGGGCUUCUGUCCAGCCGGUGACAU ------------------(((.(((((.((((((((((........(((((....(---(((....)))))))))(((.((....)))))))))))))))...))))).)))(....).. ( -47.90, z-score = -2.28, R) >droWil1.scaffold_181132 421100 95 + 1035393 ---------------------AGCCAGG-UUAACGCCCAUUAUACCAGCGGGGAUG---UUGUUUAUCACACAUUGCCGCACUUUUGGACGGGCGUCGGCUUUUGUCCAGCUGGUGAGAU ---------------------.(((((.-...((((((.........((((.((((---(((.....)).))))).)))).(....)...)))))).(((....)))...)))))..... ( -32.80, z-score = -1.56, R) >droVir3.scaffold_12963 12291073 114 + 20206255 -GCUGGCAUUGGCCACACGGCAG--CUUGGCCACGCCCACUAUACCAGCGGCGAUG---UGGUUUACCAUGCCUUGCCGCAUUUCUGGACGGGCGUGGGCUUCUGUCCAGCUGGGGAUAU -(((((((..((((.((((((..--....)))..((((.(((.....(((((((((---(((....)))))..))))))).....)))..)))))))))))..)).)))))......... ( -50.80, z-score = -1.70, R) >droMoj3.scaffold_6500 2939015 102 - 32352404 -------------GACUGAGCUG--CCCAGCCACGCCCACUAUACCAGCAGUGAUG---UCGUCUAUCAUCCAUUGCCCCACUUCUGGACCGGCGUUGGCUUCUGUCCAGCUGGCGAUAU -------------.....(((((--..((((((((((..........(((((((((---........))).)))))).(((....)))...)))).))))...))..)))))........ ( -31.20, z-score = -0.87, R) >droGri2.scaffold_15252 6203946 117 + 17193109 CUUGGUGUUAGAUGCUGCUCCUCGACAUAGCCACGCCCACUAUACCAGUGGCGAUG---UGGUUUAUCAUACGUUACCACACUUCUGGACGGGCGUCGGUUUCUGUCCGGCGGGUGAAAU ................((((((.((((.((((((((((.(((.....((((..(((---((........)))))..)))).....)))..)))))).))))..)))).)).))))..... ( -37.30, z-score = -0.24, R) >consensus _____________________CGCCAGGAUCCACGCCCACUACACCAGCGGGGAUG___UGGUCUAUCACACAUUGCCGCACUUCUGGACGGGCGUGGGCUUCUGUCCAGCCGGAGAGAU .............................(((((((((.(((.....((((((((......))))...........)))).....)))..)))))).(((.........))))))..... (-18.21 = -18.04 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:35 2011