| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,935,831 – 11,935,904 |
| Length | 73 |
| Max. P | 0.996403 |
| Location | 11,935,831 – 11,935,904 |
|---|---|
| Length | 73 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 64.44 |
| Shannon entropy | 0.63781 |
| G+C content | 0.50427 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -6.91 |
| Energy contribution | -7.47 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.93 |
| SVM RNA-class probability | 0.996403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11935831 73 + 22422827 AUCCGCAUCCACAUCCGCAUUCGCA-UUGCCAUUCGCAGCACGCAUAGAUACAUUUACAUCUGUGCU--------GCAUCCG------ ................((....)).-.(((.....)))(((.((((((((........)))))))))--------)).....------ ( -16.50, z-score = -2.12, R) >droSim1.chrX 9198221 82 + 17042790 -----CAUCCGCACUCGCAUCCGCA-UUGGCAUUCGCAGCACGCAUAGAUACAUUUACAUCUGUGCGCUGCAUUGCCAUUCGCAUCCG -----.....((....))....((.-.(((((...(((((..((((((((........)))))))))))))..)))))...))..... ( -29.40, z-score = -4.16, R) >droSec1.super_53 153648 82 + 190754 -----CAUCCGCACUCGCAUCCGCA-UUGGCAUUCGCAGCACGCAUAGAUACAUUUACAUCUGUGCGCUGCAUUGCCAUUCGCAUCCG -----.....((....))....((.-.(((((...(((((..((((((((........)))))))))))))..)))))...))..... ( -29.40, z-score = -4.16, R) >droYak2.chrX 19853364 81 - 21770863 -----AAUCCGCAUCCGCAUCUGCAAUCCACAUUCGCAGCACGCAUAGAUACAUUUACAUCUGUGCU--GCAUAGCAAUCCGCAUUCG -----.....((....((....))...........((.(((.((((((((........)))))))))--))...)).....))..... ( -19.10, z-score = -2.28, R) >droEre2.scaffold_4690 3861133 80 - 18748788 -----CAUCCGCACUCACAUGCACA-UCCGCAUUCGCAGCACGCAUAGAUACAUUUACAUCUGUGCG--ACAUUACCAUCCGCAUCCG -----.....((......((((...-...))))........(((((((((........)))))))))--............))..... ( -17.60, z-score = -3.16, R) >droAna3.scaffold_13335 1902712 62 - 3335858 -----CACUUACACACACAUGGAUA-UUAAAGCUUA-ACCCCACAAAGCCGCGUAAA-GUCCAUAGUCCG------------------ -----.............((((((.-(((..((((.-........))))....))).-))))))......------------------ ( -9.20, z-score = -2.19, R) >consensus _____CAUCCGCACUCGCAUCCGCA_UUGGCAUUCGCAGCACGCAUAGAUACAUUUACAUCUGUGCG__GCAUUGCCAUCCGCAUCCG ..........................................((((((((........))))))))...................... ( -6.91 = -7.47 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:57 2011