| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,935,437 – 11,935,498 |
| Length | 61 |
| Max. P | 0.958828 |
| Location | 11,935,437 – 11,935,498 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 81.71 |
| Shannon entropy | 0.24086 |
| G+C content | 0.60795 |
| Mean single sequence MFE | -11.97 |
| Consensus MFE | -10.87 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11935437 61 - 22422827 UUGCAGUGAUCCCACUGCAGCCAAAUGUCUGAUUACCGCACACCAUCACCACCCCACCCGG ((((((((....)))))))).....(((.((.....)).)))................... ( -10.70, z-score = -1.37, R) >droSim1.chrX 9197872 51 - 17042790 UUGCAGUGAUCCCACUGCAGCCAGAUGUCUGAUUCCCG--------CUCC--CCCCCCUGG ((((((((....)))))))).(((....))).......--------....--......... ( -12.60, z-score = -2.02, R) >droSec1.super_53 153269 53 - 190754 UUGCAGUGAUCCCACUGCAGCCAGAUCUCUGAUUCCCG--------CUCCACCCCCCCUGG ((((((((....)))))))).(((....))).......--------............... ( -12.60, z-score = -2.12, R) >consensus UUGCAGUGAUCCCACUGCAGCCAGAUGUCUGAUUCCCG________CUCCACCCCCCCUGG ((((((((....)))))))).(((....))).............................. (-10.87 = -11.20 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:57 2011