Locus 14205

Sequence ID dm3.chrX
Location 11,933,127 – 11,933,196
Length 69
Max. P 0.988380
window19561

overview

Window 1

Location 11,933,127 – 11,933,196
Length 69
Sequences 10
Columns 69
Reading direction forward
Mean pairwise identity 92.01
Shannon entropy 0.18708
G+C content 0.33177
Mean single sequence MFE -14.61
Consensus MFE -13.00
Energy contribution -13.01
Covariance contribution 0.01
Combinations/Pair 1.06
Mean z-score -2.58
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.32
SVM RNA-class probability 0.988380
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11933127 69 + 22422827
CUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUCGUCUGC
...((..((((((.....(((((((((((....)))))))))))))))))..))............... ( -14.60, z-score =  -2.60, R)
>droWil1.scaffold_180777 3672965 69 + 4753960
CUUUAAUGAAUUUUUCAGCCUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUAAUUAUCUGUUAUCCAC
...((((.(((..(((....(((((((((....)))))))))..)))..))).))))............ ( -13.70, z-score =  -1.70, R)
>droPer1.super_12 1753059 69 - 2414086
UUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUCGACUGU
...((..((((((.....(((((((((((....)))))))))))))))))..))............... ( -14.60, z-score =  -2.34, R)
>dp4.chrXL_group1a 2653181 69 + 9151740
UUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUCGACUGU
...((..((((((.....(((((((((((....)))))))))))))))))..))............... ( -14.60, z-score =  -2.34, R)
>droAna3.scaffold_13335 1899948 69 - 3335858
UUUAAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUCGUCUGC
..((((.((((((.....(((((((((((....)))))))))))))))))...))))............ ( -14.50, z-score =  -2.40, R)
>droEre2.scaffold_4690 3858350 69 - 18748788
CUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUCGUCUGC
...((..((((((.....(((((((((((....)))))))))))))))))..))............... ( -14.60, z-score =  -2.60, R)
>droYak2.chrX 19850553 69 - 21770863
CUUUAUUCAAUUUUUCAUUAUUUGCUGACAGUUGUCGGUAAAUGGAAUUGUUUAUUACCUGUCGUCUGC
...((..((((((.....(((((((((((....)))))))))))))))))..))............... ( -14.60, z-score =  -2.77, R)
>droSec1.super_53 150923 69 + 190754
CUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUCGUCUGC
...((..((((((.....(((((((((((....)))))))))))))))))..))............... ( -14.60, z-score =  -2.60, R)
>droSim1.chrX 9195519 69 + 17042790
CUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUCGUCUGC
...((..((((((.....(((((((((((....)))))))))))))))))..))............... ( -14.60, z-score =  -2.60, R)
>droMoj3.scaffold_6308 3329306 62 + 3356042
-UUUAUUAAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGAA------
-.....(((((..(((..(((((((((((....))))))))))))))..))))).........------ ( -15.70, z-score =  -3.88, R)
>consensus
CUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUCGUCUGC
........(((..(((..(((((((((((....))))))))))))))..)))................. (-13.00 = -13.01 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:55 2011