| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,902,164 – 11,902,260 |
| Length | 96 |
| Max. P | 0.570108 |
| Location | 11,902,164 – 11,902,260 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 60.51 |
| Shannon entropy | 0.68874 |
| G+C content | 0.40875 |
| Mean single sequence MFE | -22.18 |
| Consensus MFE | -12.30 |
| Energy contribution | -13.18 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.25 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11902164 96 - 22422827 AGAUAACCAGGCGGAAGCAGCGCUCCAAGUGCUACGAGCAUAGUACUCUCGGCUGCAUUCGCUGCAAG-AAAAAUGUUUGUUUAGUUAACAAAACUG------------- .......((((((((.(((((.(....(((((((......)))))))...)))))).)))))......-.......((((((.....)))))).)))------------- ( -26.10, z-score = -0.70, R) >droAna3.scaffold_13137 547648 88 - 1373759 AUACAGACCGGUGUAUUCAAUGUUCUACGUGUUAUAGCCAUGUUGU---------AAUUAGCUGAAAUAAGAAUAUCU--UUAUACUACUGAUAUUUUA----------- ...(((...((((((....(((((((...((((.((((........---------.....)))).)))))))))))..--.)))))).)))........----------- ( -14.02, z-score = -0.09, R) >droEre2.scaffold_4690 3827233 110 + 18748788 AUGAAUCCAGGCGAGAGCAGCGCUCCAGGUGCUACGAGCAUAGUACUCUCGGCUGCAUUAGCUGCAAUUAAAAAGUUUCAUUAAAUUAGCUGUCUUUAACUACAUAUGUA (((....(((.((((((.(((((.....)))))((.......)).)))))).)))...((((((...((((.........))))..))))))..........)))..... ( -23.30, z-score = 1.07, R) >droYak2.chrX 19820081 98 + 21770863 AUGAAACCAGGCGAGAGCAGCGCUCCAGGCGCUACGAGCAUAGUACUCUCGUCUGCAUUCGCUGCAAUAAAAA--------UAAAUAAACUGUACUUACAAAACUA---- ..(((..((((((((((.(((((.....)))))((.......)).))))))))))..))).............--------.........................---- ( -25.30, z-score = -1.71, R) >droSec1.super_53 118212 97 - 190754 AGGUAACCAGGCGGAAGCAGUGCUUCAGGUGCUACGAGCAUAGUACUCUCGGCGGCAUUCGCUGUAAGAAAAAAUGUUUAUUUAGUUUACAAAACUA------------- .(((.....((((((.((...(((...(((((((......)))))))...))).)).))))))(((((...((((....))))..)))))...))).------------- ( -22.20, z-score = 0.20, R) >consensus AUGAAACCAGGCGAAAGCAGCGCUCCAGGUGCUACGAGCAUAGUACUCUCGGCUGCAUUCGCUGCAAUAAAAAAUGUU__UUAAAUUAACAAUACUU_____________ .........((((((.(((((......(((((((......)))))))....))))).))))))............................................... (-12.30 = -13.18 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:53 2011