| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,900,852 – 11,900,906 |
| Length | 54 |
| Max. P | 0.799818 |
| Location | 11,900,852 – 11,900,906 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 76.98 |
| Shannon entropy | 0.32676 |
| G+C content | 0.48611 |
| Mean single sequence MFE | -16.22 |
| Consensus MFE | -13.66 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11900852 54 - 22422827 CACAUUUUCGGUUUGCUGCGGAAUGUGGAUGGGGUAGAGC-UGAUCCCAGAAGAA----------------- (((((((((((....))).))))))))..((((((.....-..))))))......----------------- ( -16.20, z-score = -1.55, R) >droSim1.chrX 9162571 54 - 17042790 CACAUUUUCGGUUUGCUGCGGAAUGUGGAUGGGGUAGAGC-UGAUCCCAGAAGAA----------------- (((((((((((....))).))))))))..((((((.....-..))))))......----------------- ( -16.20, z-score = -1.55, R) >droSec1.super_53 116926 54 - 190754 CACAUUUUCGGUUUGCUGCGGAAUGUGGAUGGGGUAGAGC-UGAUCCCAGAAGAA----------------- (((((((((((....))).))))))))..((((((.....-..))))))......----------------- ( -16.20, z-score = -1.55, R) >droEre2.scaffold_4690 3825858 72 + 18748788 CACAUUUUCGGUUUUUUGGGGAAUGUGGAUGGGGAUCAGCACUAUCCAAGCAGAGAGCGUUCCAAAUAAUGA ((((((..(.(.....).)..))))))..(((((((.......))))..((.....))...)))........ ( -16.30, z-score = -0.39, R) >consensus CACAUUUUCGGUUUGCUGCGGAAUGUGGAUGGGGUAGAGC_UGAUCCCAGAAGAA_________________ (((((((((((....))).))))))))..((((((........))))))....................... (-13.66 = -13.97 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:52 2011