| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,900,010 – 11,900,108 |
| Length | 98 |
| Max. P | 0.642460 |
| Location | 11,900,010 – 11,900,108 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 79.34 |
| Shannon entropy | 0.39784 |
| G+C content | 0.37390 |
| Mean single sequence MFE | -16.58 |
| Consensus MFE | -11.31 |
| Energy contribution | -10.87 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11900010 98 + 22422827 UCCCCCUAUUUUUUUUUCACCCAUCUGACGUCAGUUUAUGGUCUUUUGAGCCAGCAGCAUUGCAAUGCUUCAGUUGGCAUAUAUUAUUUAACAUUUUU ....................((((..(((....))).))))........(((((((((((....)))))...)))))).................... ( -18.20, z-score = -1.93, R) >droSim1.chrX 9161740 95 + 17042790 UCCCCCUUUUUUUUUUGCCCCCAACUGACGUCAGUUUAUGGUCUUUUGAGCCAGC---AUUGCAAUGCUUCAGUUGGCAUAUAUUAUUUAACAUUUUU ....................((((((((..........(((((....)).)))((---((....)))).))))))))..................... ( -17.30, z-score = -1.67, R) >droSec1.super_53 116118 94 + 190754 UCCCCCU-UUUUUUUUGCCCCCAACUGACGUCAGUUUAUGGUCUUUUGAGCCAGC---AUUGCAAUGCUUCAGUUGGCAUAUAUUAUUUAACAUUUUU .......-............((((((((..........(((((....)).)))((---((....)))).))))))))..................... ( -17.30, z-score = -1.55, R) >droYak2.chrX 19818182 88 - 21770863 UCCCCCUUUUUU-------CCCAGCUGACGUCAGUUUAUGGUCUUUUGAGCCAGC---AUUGCAAUGCUUCAGUUGGCAAAUAUUAUUUAACAUUUUU .........(((-------.((((((((..........(((((....)).)))((---((....)))).)))))))).)))................. ( -17.60, z-score = -1.58, R) >droEre2.scaffold_4690 3825098 88 - 18748788 UCCCCCUUUUUU-------CCCAGCUGACGUCAGUUUAUGGUCUUUUGAGCCUGC---ACCGCAAUGCUUCAGUUGGCAAAUAUUAUUUAACAUUUUU .........(((-------.((((((((.....(((((........)))))..((---(......))).)))))))).)))................. ( -15.00, z-score = -0.69, R) >droWil1.scaffold_181096 10319384 91 + 12416693 --UUUCUUUUGGCCAAAUCUCUUGUUGGCUCUGGUGU-CAGAGUUUUAAACUAAC---AAAGUAAUGCUUCAGUUGGUAAAUAUUAUUUAACGUUUU- --.....................((((((((((....-)))))).....((((((---.(((.....)))..))))))..........)))).....- ( -14.10, z-score = -0.12, R) >consensus UCCCCCUUUUUUUUUU_CCCCCAGCUGACGUCAGUUUAUGGUCUUUUGAGCCAGC___AUUGCAAUGCUUCAGUUGGCAAAUAUUAUUUAACAUUUUU ....................((((((((.((..(((((........)))))..((......))...)).))))))))..................... (-11.31 = -10.87 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:51 2011