| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,896,808 – 11,896,870 |
| Length | 62 |
| Max. P | 0.938475 |
| Location | 11,896,808 – 11,896,870 |
|---|---|
| Length | 62 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 72.40 |
| Shannon entropy | 0.51767 |
| G+C content | 0.44411 |
| Mean single sequence MFE | -20.01 |
| Consensus MFE | -10.15 |
| Energy contribution | -10.40 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11896808 62 + 22422827 CUUUAAAUGGCUUCCCUUUU-UGGGGGCUGCCCGGCUAUGCCAU-GGGUAUUCGAAAGAAUAAG----- ......(((((..(((....-.)))((((....))))..)))))-...(((((....)))))..----- ( -21.00, z-score = -1.52, R) >droSim1.chrX 9158567 60 + 17042790 CUUUAAAUGGCUUCCCUUUU-UGGGGGCUGCCCGGCUAUGCCAU-GGGUAUUCGAAAGAAUA------- ........(((((((.....-.)))))))(((((((...)))..-))))((((....)))).------- ( -20.80, z-score = -1.45, R) >droSec1.super_53 112992 60 + 190754 CUUUAAAUGGCUUCCCUUUU-UGGGGGCUGCCCGGCUAUGCCAU-GGGUAUUCGAAAGAAUA------- ........(((((((.....-.)))))))(((((((...)))..-))))((((....)))).------- ( -20.80, z-score = -1.45, R) >droYak2.chrX 19814868 67 - 21770863 CUUUAAAUGGCUUCCCUUUU-UGGGGGCUGCCCGGCUAAGCCAU-GGGUAUUCGAAAGAAUACCAGCUA ......((((((((((....-.)))((((....)))))))))))-.(((((((....)))))))..... ( -29.30, z-score = -3.34, R) >droEre2.scaffold_4690 3821981 63 - 18748788 CUUUGAAUGGCUUCCCUUUU-UGGGGGCUGCCAGGCUAUACCAUUGGGUAUUCGAAAGAAUAAG----- ....(..((((..((((...-..))))..))))..)..((((....))))(((....)))....----- ( -20.20, z-score = -1.65, R) >droAna3.scaffold_13137 503539 59 + 1373759 CUUUAAACGGCUUCCCCUUUAUUUGGGUUUCGAAGCUAG--CAU-GAAUAUUAAAAAAAAAU------- ........(((((((((.......)))....))))))..--...-.................------- ( -10.50, z-score = -1.05, R) >droMoj3.scaffold_6473 12751944 60 + 16943266 CUUCAAAUGUUUCUUUGUAUAUAUGG-CCGAGCGGCAAGGCUAU-GCAAGCGAAAUAUUAUU------- .....((((((((((((((((....(-((....))).....)))-))))).))))))))...------- ( -17.50, z-score = -2.49, R) >consensus CUUUAAAUGGCUUCCCUUUU_UGGGGGCUGCCCGGCUAUGCCAU_GGGUAUUCGAAAGAAUA_______ ........(((..(((((....)))))..))).(((...)))......(((((....)))))....... (-10.15 = -10.40 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:50 2011