| Sequence ID | dm3.chr2L |
|---|---|
| Location | 987,511 – 987,566 |
| Length | 55 |
| Max. P | 0.827428 |
| Location | 987,511 – 987,566 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 66.27 |
| Shannon entropy | 0.56443 |
| G+C content | 0.47329 |
| Mean single sequence MFE | -14.06 |
| Consensus MFE | -8.16 |
| Energy contribution | -7.32 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 987511 55 + 23011544 CCAUGCCUGCUGCAAUGGUAAUCUUCUGAUUUCGGUACAACUGGAAUCGAUGGCU---------- ....(((((((.....))))......(((((((((.....)))))))))..))).---------- ( -14.40, z-score = -1.63, R) >droSim1.chr2L 971272 55 + 22036055 CCAUCCCUGCUGUAAUGGUAAUCUGCUGAUUUCGGUACGACUGGAAUCGAUGGCU---------- (((((..((((.....)))).......((((((((.....)))))))))))))..---------- ( -15.60, z-score = -2.04, R) >droSec1.super_14 950782 55 + 2068291 UCAUCCCUGCUGCAAUGGUAAUCUGCUGAUUUCGGUACGGCUGGAAUCGAUGGCU---------- (((((..((((.....)))).......((((((((.....)))))))))))))..---------- ( -13.70, z-score = -0.40, R) >droYak2.chr2L 971310 55 + 22324452 GUAUUCCAGCUGCACUGGUAAUCUGCUGAUUUCGGUGCGCUUGGUAUCGAUGGCU---------- .....((((.((((((((.((((....)))))))))))).))))...........---------- ( -17.40, z-score = -1.65, R) >droVir3.scaffold_12963 19573595 65 + 20206255 UCAAGUCUAUUGAGAUGAUAACCAACUGUUUAUGCAAUUUUCGGGCACAACUGAUUUAGGCGUCU ....((((((((....((((......))))....)))...((((......))))..))))).... ( -9.20, z-score = 0.61, R) >consensus CCAUCCCUGCUGCAAUGGUAAUCUGCUGAUUUCGGUACGACUGGAAUCGAUGGCU__________ .......((((.....))))..((..(((((((((.....)))))))))..))............ ( -8.16 = -7.32 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:27 2011