| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,895,373 – 11,895,469 |
| Length | 96 |
| Max. P | 0.600541 |
| Location | 11,895,373 – 11,895,469 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 83.38 |
| Shannon entropy | 0.28196 |
| G+C content | 0.33839 |
| Mean single sequence MFE | -22.41 |
| Consensus MFE | -18.92 |
| Energy contribution | -19.76 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11895373 96 - 22422827 ------------AUUUCCAUACAAAGUCCAUAAUAAUGAUCUUUCAGUUAAUGGGUUGAUUUCAAUUAGAGUUUGGGCAGAGACAUCCCAAUUACUGUGAGACAUAAA ------------.......................(((.((((.((((...((((.((.((((................)))))).))))...)))).)))))))... ( -17.49, z-score = -0.07, R) >droSim1.chrX 9157139 108 - 17042790 AACCACUUGAGUAUUUCCAUACAAAAUCCAUAGUAAUGAUCUUGCAGUUAAUGGGGUGAUUUCAAUUAGAGUUUGGGAAGAGACAUCCCAAUUACUGUGAGACAUAAA ..........((((....)))).............(((.(((..((((...(((((((.((((................)))))))))))...))))..))))))... ( -26.09, z-score = -1.49, R) >droSec1.super_53 111620 108 - 190754 AACUACUUGAGUAUUUCCAUACAAAAUCCAUAGUAAUGAUCUUGCAGUUAAUGGGGUGAUUUCAAUUAGAGUUUGGGAAGAGACAUCCCAAUUACUGUGAGACAUAAA ..........((((....)))).............(((.(((..((((...(((((((.((((................)))))))))))...))))..))))))... ( -26.09, z-score = -1.58, R) >droYak2.chrX 19813416 99 + 21770863 ---------AGUAUCACUAUACGAAAUCCAUAAUAAUGAUCUUGCAGUUGAUGGGGUGAUUUCAAUUAAAGUUUGGGAAAAGACAUCCAAAUUACUGUAAGACAUAAA ---------.((((....)))).............(((.(((((((((.....(((((.(..(((.......)))..).....))))).....))))))))))))... ( -22.20, z-score = -2.01, R) >droEre2.scaffold_4690 3820555 94 + 18748788 ---------AGUAUUUCUUUA-----UCCAUAGUAAUGAUUCUGCAGUUGAUGCGGUGAUUUCAAUUGGAGUUUGGGAAGAGACAUCCAAAUUGCUGUAAGACAUAAA ---------..(((.((((..-----...(((((((((((((((((.....))))).))))....(((((((((......)))).))))))))))))))))).))).. ( -20.20, z-score = -0.57, R) >consensus _________AGUAUUUCCAUACAAAAUCCAUAGUAAUGAUCUUGCAGUUAAUGGGGUGAUUUCAAUUAGAGUUUGGGAAGAGACAUCCCAAUUACUGUGAGACAUAAA ...................................(((.(((((((((...(((((((.((((((.......)))))).....)))))))...))))))))))))... (-18.92 = -19.76 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:50 2011