| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,817,389 – 11,817,482 |
| Length | 93 |
| Max. P | 0.709659 |
| Location | 11,817,389 – 11,817,482 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.29032 |
| Mean single sequence MFE | -15.50 |
| Consensus MFE | -15.50 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.709659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11817389 93 - 22422827 UCAAUUUAAUAGCGUAGUAAGGCAACAUUUACGAUGCUAUAAACUAAUUGCUAUAAAAGUAAGGGUCACAUGAAUUUCAGUAGAAAUAUUUCU (((.....(((((((.(((((......))))).)))))))..(((..(((((.....))))).)))....)))(((((....)))))...... ( -15.50, z-score = -1.11, R) >droSim1.chrX 9095721 93 - 17042790 UCAAUUUAAUAGCGUAGUAAGGCAACAUUUACGAUGCUAUAAACUAAUUGCUAUAAAAGUAAGGGUCACAUGAAUUUCAGUAGAAAUAUUUCU (((.....(((((((.(((((......))))).)))))))..(((..(((((.....))))).)))....)))(((((....)))))...... ( -15.50, z-score = -1.11, R) >droSec1.super_53 34702 93 - 190754 UCAAUUUAAUAGCGUAGUAAGGCAACAUUUACGAUGCUAUAAACUAAUUGCUAUAAAAGUAAGGGUCACAUGAAUUUCAGUAGAAAUAUUUCU (((.....(((((((.(((((......))))).)))))))..(((..(((((.....))))).)))....)))(((((....)))))...... ( -15.50, z-score = -1.11, R) >consensus UCAAUUUAAUAGCGUAGUAAGGCAACAUUUACGAUGCUAUAAACUAAUUGCUAUAAAAGUAAGGGUCACAUGAAUUUCAGUAGAAAUAUUUCU (((.....(((((((.(((((......))))).)))))))..(((..(((((.....))))).)))....)))(((((....)))))...... (-15.50 = -15.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:41 2011