| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,814,842 – 11,814,941 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 11,814,842 – 11,814,941 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 93.94 |
| Shannon entropy | 0.08348 |
| G+C content | 0.35354 |
| Mean single sequence MFE | -17.66 |
| Consensus MFE | -15.19 |
| Energy contribution | -15.63 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 11814842 99 - 22422827 CAAUAGUUACCCAGUGAUGAGCCAUGUUAGCAUUAGACGCCAAAUUACAGCUAACAAAAGUUGGUUCAUGACUUUCCGUAAAAGAACAUCCGAUUUUUU ......((((..(((.(((((((((((((((..................))))))).....)))))))).)))....)))).................. ( -21.37, z-score = -2.75, R) >droSim1.chrX 9093308 99 - 17042790 CAAUAGUUACCCAGUGAUGAGCCAAGUUAGCAUUAGUAGCCAAAUUACAGCUAACAAAAGUUGGUUCCUGAUUUUCCGUAAAAGAACAACAUUUUUUUU ......((((..(((.(.(((((((((((((..((((......))))..)))))).....))))))).).)))....)))).................. ( -15.80, z-score = -1.03, R) >droSec1.super_45 44694 99 - 245362 CAAUAGUUACCCAGUGAUGAGCCAAGUUAGCAUUAGUAGCCAAAUUACAGCUAACAAAAGUUGGUUCCUGAUUUUCCGUAAAAGAACAACAUUUUUUUU ......((((..(((.(.(((((((((((((..((((......))))..)))))).....))))))).).)))....)))).................. ( -15.80, z-score = -1.03, R) >consensus CAAUAGUUACCCAGUGAUGAGCCAAGUUAGCAUUAGUAGCCAAAUUACAGCUAACAAAAGUUGGUUCCUGAUUUUCCGUAAAAGAACAACAUUUUUUUU ......((((..(((.(.(((((((((((((..((((......))))..)))))).....))))))).).)))....)))).................. (-15.19 = -15.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:40 2011