| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,103,501 – 11,103,551 |
| Length | 50 |
| Max. P | 0.991175 |
| Location | 11,103,501 – 11,103,551 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 88.00 |
| Shannon entropy | 0.16529 |
| G+C content | 0.42667 |
| Mean single sequence MFE | -15.74 |
| Consensus MFE | -12.17 |
| Energy contribution | -12.50 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.30 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.46 |
| SVM RNA-class probability | 0.991175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11103501 50 - 23011544 UAAGCAUUUGCAAAGGAAACCGUAAACUUCGGGAAACCGAAUUUGCUUAU (((((((((((...(....).))))).(((((....)))))..)))))). ( -17.30, z-score = -4.65, R) >droSim1.chr2L 10902776 50 - 22036055 UUAGCAUUUGCAAAGGAAACCAUUAUCUUCGGGCCACCGAAGUUGCCUAU .........((((.(....)......((((((....)))))))))).... ( -12.50, z-score = -1.69, R) >droSec1.super_3 6504813 50 - 7220098 UUAGCAUUUGCAAAGGCAACCAUAAACUUCGGGCCACCGAAGUUGCCUAU ...((....))..(((((.......(((((((....)))))))))))).. ( -17.41, z-score = -3.55, R) >consensus UUAGCAUUUGCAAAGGAAACCAUAAACUUCGGGCCACCGAAGUUGCCUAU .........((((.(....)......((((((....)))))))))).... (-12.17 = -12.50 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:33 2011