| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,780,919 – 11,781,011 |
| Length | 92 |
| Max. P | 0.781845 |
| Location | 11,780,919 – 11,781,011 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 89.48 |
| Shannon entropy | 0.18014 |
| G+C content | 0.42839 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -17.49 |
| Energy contribution | -18.13 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11780919 92 - 22422827 AAAGUCAACGACAACAAAUCCAGGUGAGAGACCAGAAAAGAU------AUAUGGGUUUGGAAUUAUCACGUUGGCAGGGCAUAGCCAGCUAUACUAAC ...(((((((....(((((((((((.....))).........------...))))))))((....)).)))))))..((.((((....)))).))... ( -21.20, z-score = -1.97, R) >droSim1.chrX 9081238 90 - 17042790 AAAGUCAACGACAACAAACCCAGGU--GAGACCAACAAAGAU------AAAUGGGUUUGGAAUUAUCACGUUGGCAGGGCAUAGCCAGCUAUACUAAC ...(((((((....((((((((((.--....)).........------...))))))))((....)).)))))))..((.((((....)))).))... ( -22.80, z-score = -2.37, R) >droSec1.super_966 6074 90 - 6410 AAAGUCAACGACCACCAACCCAGGU--GAGACCAACAAAGAU------AAAUGGGUUUGGAAUUAUCACGUUGGCAGGGCAUAGCCAGCUAUACUAAC ...(((((((..((((......)))--)(((((.........------.....)))))..........)))))))..((.((((....)))).))... ( -21.04, z-score = -1.05, R) >droYak2.chrX 6853938 90 + 21770863 GAAGUCAACGACAACAAACCCAGGU--GAGAGCACAAAAGUU------AAAUGGGUUUGGAUUUAUCACGUUGGCAGGACAUUGCCAGCUAUACUAAC ((.(((...)))..((((((((...--...(((......)))------...))))))))......))..((((((((....))))))))......... ( -25.00, z-score = -2.88, R) >droEre2.scaffold_4690 15330128 96 + 18748788 AAAUUCAACGACAACAAACCCAGGU--GAGACCACAAAAUAUACAAAAAAAUGGGAUUGGAAUUAUCACGUUGGCAGGGCAUAGCCAGCUAUACUAAC ..............(((.((((.((--(....)))................)))).)))..........((((((........))))))......... ( -17.33, z-score = -1.17, R) >consensus AAAGUCAACGACAACAAACCCAGGU__GAGACCAAAAAAGAU______AAAUGGGUUUGGAAUUAUCACGUUGGCAGGGCAUAGCCAGCUAUACUAAC ...(((((((....((((((((.............................))))))))((....)).))))))).((..((((....)))).))... (-17.49 = -18.13 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:34 2011