| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,751,167 – 11,751,313 |
| Length | 146 |
| Max. P | 0.571269 |
| Location | 11,751,167 – 11,751,313 |
|---|---|
| Length | 146 |
| Sequences | 3 |
| Columns | 152 |
| Reading direction | forward |
| Mean pairwise identity | 77.70 |
| Shannon entropy | 0.28833 |
| G+C content | 0.31076 |
| Mean single sequence MFE | -29.33 |
| Consensus MFE | -19.56 |
| Energy contribution | -19.90 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11751167 146 + 22422827 GAUAUUUAAAAUAUUCAAGAUAUUCGCUAAAAAACACAUAAUAUAAUUAUUGUUUUGUUGGGCGCUGGCAGCUCGAGUUUUAUUUGCCAGAUUAUAGCGUGUU------UUUUGCGAGUGUUCAGGAAGAACUUAUAUAUACAUAUUUAUGU .((((.(((....(((..(((((((((.(((((((((((((((....))))))...((((....(((((((............)))))))....)))))))))------)))))))))))))...)))....))).))))............ ( -37.40, z-score = -2.96, R) >droSim1.chrX 9051578 124 + 17042790 AAUAUUUUAAAUAUUCAAGAUAUUCGCUGGAAA-CACAUAAUAUAACUAAUACUUUGUGGGGC------AGCUUGAGUUUUAUUUGCCAGAUUAUAGCGAGUUGUUUUUUUUUGCGAGUGUUCAGGAAGAG--------------------- .............(((..(((((((((..((((-((((...(((.....)))...))))((((------((((((......(((.....))).....))))))))))))))..)))))))))...)))...--------------------- ( -26.10, z-score = -1.02, R) >droSec1.super_36 424030 120 + 449511 AAUAUUUUAAAUAUUCAAGAUAUUCGCUGGAAA-CACAUAAUAUAACUAUUAUUUUGUGGGGC------AGCUUGAGUUUUAUUUGCCAGAUUAUAGCGAGUU--UUUUUUUUGCGAGUGUUCAGGAAG----------------------- ....((((.(((((((((((.((((((((....-((((.((((.......)))).)))).(((------((............)))))......)))))))).--))))......))))))).))))..----------------------- ( -24.50, z-score = -1.22, R) >consensus AAUAUUUUAAAUAUUCAAGAUAUUCGCUGGAAA_CACAUAAUAUAACUAUUAUUUUGUGGGGC______AGCUUGAGUUUUAUUUGCCAGAUUAUAGCGAGUU__UUUUUUUUGCGAGUGUUCAGGAAGA______________________ .............(((..(((((((((.((((..((((.((((.......)))).)))).(((......(((....)))......)))....................)))).)))))))))...)))........................ (-19.56 = -19.90 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:32 2011