| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,732,840 – 11,732,941 |
| Length | 101 |
| Max. P | 0.829678 |
| Location | 11,732,840 – 11,732,941 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 61.85 |
| Shannon entropy | 0.59318 |
| G+C content | 0.38966 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -12.32 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11732840 101 + 22422827 -UUCUCUCUGGUUUCCGGAAUUAGAGCAAUUCGUUUACAUAAUACCAUCAAUCAUGGUACAAUCUUGAAUGAUUGAUGAA----GCCAGCGACUACUGCACAAAAU---------- -...((.((((((((.((.((((((((.....))))...)))).))(((((((((.............))))))))))))----))))).))..............---------- ( -24.52, z-score = -2.43, R) >droSim1.chrX 9033959 100 + 17042790 -UUCCAUUUUUUAUCCGGAAUUGGAGCAAUUCGUUUACAUAAUACCAUCAAUCACGGAACAAUCUUGGAUGAUUGAUGAA----GCAAAAGACUACUGCACAAAU----------- -...((((..(((((((..((((((((.....))))........((.........))..))))..)))))))..))))..----(((.........)))......----------- ( -18.40, z-score = -1.14, R) >droYak2.chrX 6804596 101 - 21770863 UCUUUCGCUGUUUUCUGGUAUUAGAGCACUGUGUUUACAUAAUACCAUCAAUCAUGGUAAAAUCCUCAGUGAUUGAUGGA----GGAAGUGACCGCUGCACAAAU----------- ....(((((.(((((((((((((((((.....))))...)))))))(((((((((((......))...))))))))))))----)))))))).............----------- ( -26.30, z-score = -1.54, R) >droAna3.scaffold_13335 786530 110 + 3335858 -----CUUUGAGUGCUGGCUUUGGGAUUAGAUCAUGUUAUGG-GCCAUCCAUCAUUGUUCCAUCAUUUAUGAUUGAUGAUUGAUGGUAGGGACUACUGCACUUCCCCCAUGAGAUC -----((..((((....))))..))....((((...((((((-((((((.(((((((....((((....))))))))))).)))))).((((..........)))))))))))))) ( -29.10, z-score = 0.28, R) >consensus _UUCUCUCUGUUUUCCGGAAUUAGAGCAAUUCGUUUACAUAAUACCAUCAAUCAUGGUACAAUCUUGAAUGAUUGAUGAA____GCAAGAGACUACUGCACAAAU___________ .....(((((((....(((((((((((.....))))...)))))))(((((((((((......))...))))))))).......)))))))......................... (-12.32 = -13.08 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:31 2011