Locus 14185

Sequence ID dm3.chrX
Location 11,731,975 – 11,732,094
Length 119
Max. P 0.750029
window19532

overview

Window 2

Location 11,731,975 – 11,732,094
Length 119
Sequences 3
Columns 125
Reading direction forward
Mean pairwise identity 70.43
Shannon entropy 0.42397
G+C content 0.52915
Mean single sequence MFE -42.10
Consensus MFE -27.85
Energy contribution -27.30
Covariance contribution -0.55
Combinations/Pair 1.23
Mean z-score -1.33
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.58
SVM RNA-class probability 0.750029
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11731975 119 + 22422827
GAAGUAGAUGAAGUUGAACUA------GCCACUGCCAGGAGGCUGGCGAGGAUCAGUACGCAGAGGAAUCGCAUCUUGCGGCUUUGGGGCAGUGGUACUUGGAACUGUGCCUUUAUCUCUAUUCU
(((..((((((((........------(((((((((..(((((((((((...((........))....))))......)))))))..)))))))))((........))..))))))))...))). ( -40.30, z-score =  -0.88, R)
>droSim1.chrX 9033100 125 + 17042790
GAAGCAGCUGGAGUGGAGGUGCUGUGUGCCACUGCCAGGAGGCAGGCGAGGAUCAGUACGCAGAGGAAUCGCAUCUUGUUGCUUUGGGGCAGUGGCACUUGGAACUGUGUCUUUCGCUUCAUUCU
........((((((((((((((.(((((((((((((..(((((((((((...((........))....))))......)))))))..))))))))))).....)).))).))))))))))).... ( -50.40, z-score =  -1.29, R)
>droYak2.chrX 6803499 101 - 21770863
------------------------GAAGCAAUCGCCAGGAUGCUGGCGAGGAUCAGAACGCAGAGGAAUCGCAUGGUGUGGUUUUGAGGCAAUGGCACUUGGAACUGUGCUUUUCAACCGAUUCU
------------------------...((..(((((((....)))))))(........)))...(((((((...((((..((((..((((....)).))..))))..)))).......))))))) ( -35.60, z-score =  -1.83, R)
>consensus
GAAG_AG_UG_AGU_GA__U_______GCCACUGCCAGGAGGCUGGCGAGGAUCAGUACGCAGAGGAAUCGCAUCUUGUGGCUUUGGGGCAGUGGCACUUGGAACUGUGCCUUUCACUCCAUUCU
...........................(((((((((..(((((((((((...((........))....))))......)))))))..)))))))))............................. (-27.85 = -27.30 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:30 2011