| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,686,487 – 11,686,600 |
| Length | 113 |
| Max. P | 0.933705 |
| Location | 11,686,487 – 11,686,600 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 84.42 |
| Shannon entropy | 0.28325 |
| G+C content | 0.54261 |
| Mean single sequence MFE | -36.86 |
| Consensus MFE | -29.54 |
| Energy contribution | -29.58 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11686487 113 + 22422827 AUUGCUUUUCCGAACCAGUGUUGCGAAACGCGCAAUCCCGAUUAGCCGAUACAUCGCUUAGCGAUGACACGGCGCCACAUCGAUUGGCAAUCGCCUGCGGACAGCGCAGGACA .................(..(((((.....)))))..)(((((.((((...((((((...))))))...))))((((.......)))))))))((((((.....))))))... ( -39.60, z-score = -1.88, R) >droEre2.scaffold_4690 15234217 97 - 18748788 ---ACGUUCCCGAAACAGUGUU-------------UCCAGAUUUGCCGAUAUAUCGCUUAGCGAUGACACGGCGUCACAUCGAUUGACAAUCGCCUGCGGACAGCGCAGGACG ---........(((((...)))-------------))..((((.((((...((((((...))))))...))))((((.......))))))))(((((((.....)))))).). ( -29.80, z-score = -1.31, R) >droYak2.chrX 6758446 113 - 21770863 AUUGCUUUCCUGAAACAGUGUUUUCAAGCGCGCAAGCCAUACAAACCGAUAUAUCGCUUAGCGAUGACACGGCGUCACGGCGAUUGGCAAUCGCCUGCGGACAGCGCAGGACA .......(((((.....(((((.((((((((....))..........((....))))))...)).))))).(((((..((((((.....))))))....))).)).))))).. ( -34.20, z-score = -0.25, R) >droSec1.super_36 360409 113 + 449511 AUUGCUUUCCCGAACCAGUGUUGCGAAACGCAAAACCCUGAUUAGCCGAUACAUCGCUUAGCGAUGACACGGCGCCACAUCGAUUGGCAAUUGCCUGCGGACAGCGCAGGACA ((((((....(((..(((..(((((...)))))....)))....((((...((((((...))))))...))))......)))...))))))((((((((.....)))))).)) ( -38.60, z-score = -2.56, R) >droSim1.chrX 9001585 113 + 17042790 AUUACUUUCCCGAACCAGUGUUGCGAAACGCGCAACCCUGAUUAGCCGAUACAUCGCUUAGCGAUGACACGGCGCCACAUCGAUUGGCAAUUGCCUGCGGACAGCGCAGGACA ...............(((.((((((.....)))))).)))....((((...((((((...))))))...))))((((.......))))...((((((((.....)))))).)) ( -42.10, z-score = -3.75, R) >consensus AUUGCUUUCCCGAACCAGUGUUGCGAAACGCGCAACCCAGAUUAGCCGAUACAUCGCUUAGCGAUGACACGGCGCCACAUCGAUUGGCAAUCGCCUGCGGACAGCGCAGGACA ..........(((....(((((....))))).............((((...((((((...))))))...))))((((.......))))..)))((((((.....))))))... (-29.54 = -29.58 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:26 2011