| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,682,943 – 11,683,040 |
| Length | 97 |
| Max. P | 0.655048 |
| Location | 11,682,943 – 11,683,040 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.62 |
| Shannon entropy | 0.50553 |
| G+C content | 0.51199 |
| Mean single sequence MFE | -31.00 |
| Consensus MFE | -14.98 |
| Energy contribution | -15.82 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11682943 97 - 22422827 AACAUCCAGGAUAAUUAUGAG---GACGGCGGUCAGUAGGAGCGAUCCAUUCCUGCCCA----UGAUCCUCUCCAUUAAUC---CGGAUGACGGUGAGCUACAAUUA ..(((((.(((((((...(((---((((..((...(((((((.......))))))))).----)).)))))...))).)))---))))))................. ( -28.20, z-score = -0.86, R) >droEre2.scaffold_4690 15231108 97 + 18748788 AACAUCCAGGAUGAUUAAGAG---CACGGCGAUCAGCAGGAGCGAUCCAUUCCUGCCCA----UGAUCGUUGGCAUUAUUC---CGGAUCACGGUGAGCUAUAAUUG ...((((.(((((((.....(---(.((((((((((((((((.......)))))))...----))))))))))))))))))---.)))).................. ( -31.20, z-score = -1.89, R) >droYak2.chrX 6755327 79 + 21770863 AGCAUCCAGGAUGAUUAUGAG---CACGGCGAUCAGCAGGAGCGAUCCAGUCCUGCCCA----UGAUCGCUGGCAUUAUUC---CGGAU------------------ ...((((.(((((((.....(---(.(((((((((((((((.(......)))))))...----))))))))))))))))))---.))))------------------ ( -34.00, z-score = -3.20, R) >droSec1.super_36 357273 97 - 449511 AACAUCCAGGAUAAUUAUGAG---CACGGCGGUCAGUAGGAGCGAUCCAUUCCUGCCCA----UGAUCGCCUCCAUUAUUC---CGGAUGACGGUGAGCUACAAUUG ..(((((.(((((((...((.---...(((((((((((((((.......)))))))...----)))))))))).)))))))---.)))))................. ( -31.10, z-score = -1.95, R) >droSim1.chrX 8998417 96 - 17042790 -ACAUCCAGGAUAAUUAUGAG---CACGGCGGUCAGUAGGAGCGAUCCAUUCCUGCCCA----UGAUCGCCUCCAUUAUUC---CGGAUGACGGUGAGCUACUAUUG -.(((((.(((((((...((.---...(((((((((((((((.......)))))))...----)))))))))).)))))))---.)))))................. ( -31.10, z-score = -1.77, R) >droAna3.scaffold_13417 1459878 107 - 6960332 GAGCUCAAGGAUCAGCAGUAGACUAAAGGCGAGGAUCAGGAACACGCUAUUCCUGUCCAUGGCUGGUGGAUGGGAUUCUCCGCACGGAUGUUGGGGGUAUUCGCUUA ((((.....((((.((..(......)..))...))))..(((.((.((..((((((((((.....))))))))))...(((....))).....)).)).))))))). ( -30.40, z-score = 0.71, R) >consensus AACAUCCAGGAUAAUUAUGAG___CACGGCGAUCAGCAGGAGCGAUCCAUUCCUGCCCA____UGAUCGCCGCCAUUAUUC___CGGAUGACGGUGAGCUACAAUUG ...((((.(((((((............(((((((((((((((.......))))))).......))))))))...)))))))....)))).................. (-14.98 = -15.82 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:25 2011