| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,617,522 – 11,617,616 |
| Length | 94 |
| Max. P | 0.804597 |
| Location | 11,617,522 – 11,617,616 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 63.50 |
| Shannon entropy | 0.57734 |
| G+C content | 0.45597 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -11.27 |
| Energy contribution | -12.28 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11617522 94 - 22422827 --GUGCAUGUAUAUUCGUUAUGUCUUGGCUAUC--------UGGCUAUCUGGAUAUCUGGAUAUCCGGAGACCAGAGCCCAGAG-UCCCAUCUAAAUAUGACAUA --..............(((((((..(((...((--------(((...(((((...(((((....)))))..)))))..))))).-..))).....)))))))... ( -31.10, z-score = -2.30, R) >droSim1.chrX 8948058 102 - 17042790 --GUGCACGUAUAUUCGUUAUGCCUUGGCUAUCUGGCCAUUUGGCCAUUUGGCUAUCUGGAUAUCCAGGGACCAGAGCCCAGAG-UCCCAUCUACAUAUGACAUA --..............((((((((.((((((..(((((....)))))..))))))...)).......((((((........).)-)))).......))))))... ( -31.90, z-score = -1.25, R) >droSec1.super_36 306478 94 - 449511 --GUGCAUAUAUAUUCGUUAUGCCUUGGCUAUC--------UGGCUAUUUGGCUAUCUGGAUAUCCAGAGACCAGAGCCCAGAG-UCCCAUCUACAUAUGACAUA --..............((((((...(((...((--------(((...(((((...(((((....)))))..)))))..))))).-..)))......))))))... ( -27.60, z-score = -1.57, R) >droAna3.scaffold_13417 1366456 104 - 6960332 AUUUAAAAACAUAUCCGUCCAUCCAUAUCCAUCUUUCCA-AUCCAUCCAUGAACUUCGUGACGCUCGCAGCCAGCGGCGGAGAGAACGGAAUUAUGGCCAAGUCA ......................((((((((.(((((((.-.......((((.....))))..((.(((.....))))))))))))..)))..)))))........ ( -26.10, z-score = -2.04, R) >consensus __GUGCAUAUAUAUUCGUUAUGCCUUGGCUAUC________UGGCUAUUUGGAUAUCUGGAUAUCCAGAGACCAGAGCCCAGAG_UCCCAUCUACAUAUGACAUA ................(((((((.((((.............(((...(((((...(((((....)))))..)))))..)))..........)))))))))))... (-11.27 = -12.28 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:17 2011