| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,610,426 – 11,610,518 |
| Length | 92 |
| Max. P | 0.888127 |
| Location | 11,610,426 – 11,610,518 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 79.60 |
| Shannon entropy | 0.34638 |
| G+C content | 0.49143 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -18.01 |
| Energy contribution | -19.13 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11610426 92 + 22422827 GCGAUAUGCGUGCGAUAUAUCGCAUCGAUACU-CGAUGCGGAUGCCCAUCUGUUUUGCGACAUUUUCCCGCUUUCCCUGUUGCAAAACCCGUU-------------------- ..(((..((((.(((....))((((((.....-))))))).))))..))).(((((((((((...............))))))))))).....-------------------- ( -28.06, z-score = -2.72, R) >droSim1.chrX 8940340 92 + 17042790 GCGAUAUGCGUGCGAUAUAUCGCAUCGAUACU-CGAUGCGGAUGCCCAUCUGUUUUGCGACAUUUUCCCGCUUUCCCUGUUGCAAAACCCGUU-------------------- ..(((..((((.(((....))((((((.....-))))))).))))..))).(((((((((((...............))))))))))).....-------------------- ( -28.06, z-score = -2.72, R) >droSec1.super_36 299478 92 + 449511 GCGAUAUGCGUGCGAUGUAUCGCAUCGAUACU-CGAUGCGGAUGCCCAUCUGUUUUGCGACAUUUUCCCGCUUUCCCUGUUGCAAAACCCGUU-------------------- (((.....)))(((..(((((((((((.....-)))))).)))))......(((((((((((...............))))))))))).))).-------------------- ( -28.16, z-score = -2.48, R) >droYak2.chrX 6695451 92 - 21770863 GCGAUAUGCGUGCGAUAUAUCGCAUCGAUACU-CGAUGCGGAUGCCCAUCUGUUUUGCGGCUUUUUCCCGCUUUCCCUGUUGCAAAACCCGUU-------------------- ((((((.(.(.(((.......((((((.....-))))))(((.(((((.......)).)))....))))))...)).))))))..........-------------------- ( -27.50, z-score = -2.01, R) >droEre2.scaffold_4690 15172447 92 - 18748788 GCGAUAUGCAUGCGAUAUAUCGCAUCGAUACU-CGAUGCUGAUGCCCAUCUGUUUUGCGGCAUUUUCCCGCAUUCCCUGUUGAAAAACCAGUU-------------------- .(((((.(.(((((.......((((((.....-)))))).((((((((.......)).))))))....)))))..).)))))...........-------------------- ( -25.60, z-score = -1.95, R) >droAna3.scaffold_13117 1107799 111 - 5790199 GCGAUAGAUAGAAGAUACAUCGUAUCGAUAUUUCGAUGAGAAGGGCCAUCUGUUA-GCGGCGACUUUCCACAUUUCCU-UUACCCCACUUGGCCGCCAUUUCAAAAACCCGUU (((...((((((.(...(.((.((((((....)))))).)).)...).)))))).-(((((.................-............))))).............))). ( -20.45, z-score = 0.42, R) >consensus GCGAUAUGCGUGCGAUAUAUCGCAUCGAUACU_CGAUGCGGAUGCCCAUCUGUUUUGCGACAUUUUCCCGCUUUCCCUGUUGCAAAACCCGUU____________________ ..(((..((((........((((((((......))))))))))))..))).(((((((((((...............)))))))))))......................... (-18.01 = -19.13 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:16 2011