| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,591,843 – 11,591,934 |
| Length | 91 |
| Max. P | 0.992417 |
| Location | 11,591,843 – 11,591,934 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 88.46 |
| Shannon entropy | 0.20687 |
| G+C content | 0.28862 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -16.50 |
| Energy contribution | -18.18 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.992417 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 11591843 91 - 22422827 AAAAUUAGCUGUUAACAUAAGCAAUUUAGUAAUUUGAGCAGACAAUUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUGCUUCU .(((((.(((.........))))))))((((((((((((..((((...((((((((.....))))))))...))))))))))))))))... ( -25.90, z-score = -4.01, R) >droEre2.scaffold_4690 15154076 90 + 18748788 AACACUAGCCAUUAACAUAAGCAGUUU-GUAAUUCGAGCAGACAAUUCGCAUUACAAUAAACAUUAUACUUCUUGUGCUUAAAUUACGUCU ...........((((((((((.(((((-(((((.((((.......)))).)))))))..........))).)))))).))))......... ( -13.90, z-score = -1.28, R) >droYak2.chrX 6677095 91 + 21770863 AACACUUGUUAUUACCAUAAGCAAUUUGGUAAUUCGAGCAGAAAAUUCGUAUUACAAUAUAUCUGAUACUUUUCGUGCUUAAAUUACUUCU ....(((((.......)))))......(((((((..(((((((((...((((((.........))))))))))).))))..)))))))... ( -17.30, z-score = -2.77, R) >droSec1.super_36 280462 91 - 449511 AAAACUAGCUGUUAACAUGAGCAAUUUAGUAAUUUGAGCAGACAAUUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUACCUCU .......(((.........)))......(((((((((((..((((...((((((((.....))))))))...))))))))))))))).... ( -23.60, z-score = -3.82, R) >droSim1.chrX 8920731 91 - 17042790 AAAACUAGCUGUUAACAUGAGCAAUUUAGUAAUUUGAGCAGACAACUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUACUUCU .......(((.........))).....((((((((((((..((((...((((((((.....))))))))...))))))))))))))))... ( -23.80, z-score = -3.64, R) >consensus AAAACUAGCUGUUAACAUAAGCAAUUUAGUAAUUUGAGCAGACAAUUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUACUUCU .......(((.........)))......((((((((((((..(((...((((((((.....))))))))...))))))))))))))).... (-16.50 = -18.18 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:11 2011