| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,582,222 – 11,582,277 |
| Length | 55 |
| Max. P | 0.925524 |
| Location | 11,582,222 – 11,582,277 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 85.56 |
| Shannon entropy | 0.25854 |
| G+C content | 0.44400 |
| Mean single sequence MFE | -11.76 |
| Consensus MFE | -7.20 |
| Energy contribution | -8.44 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11582222 55 - 22422827 AAAGACAAUAGUAGAGUAGCGAUUCCCAUAUCAGUCACACUGAUGGAACGCACCC ..................(((.((((...(((((.....)))))))))))).... ( -13.00, z-score = -3.03, R) >droSim1.chrX 8909753 55 - 17042790 AAAGACAAUAGUCGAGUAGCGAUUCCCAUAUCAGUCACACUGAUGGAACGCACCC ...(((....))).....(((.((((...(((((.....)))))))))))).... ( -15.40, z-score = -3.61, R) >droSec1.super_36 270850 55 - 449511 AAAGACAAUAGUCGAGUAGCGAUUCCCAUAUCAGUCACACUGAUGGAACGCACCC ...(((....))).....(((.((((...(((((.....)))))))))))).... ( -15.40, z-score = -3.61, R) >droEre2.scaffold_4690 15144169 50 + 18748788 AAAGUCAAU-----AGUAGCGAUUCCCAUAUCAGUCACACUGAUGGAACGCACCC .........-----....(((.((((...(((((.....)))))))))))).... ( -13.00, z-score = -3.47, R) >droGri2.scaffold_14853 8800737 50 + 10151454 AAAAACAAUAA---AAUA--CAAGCCGAUAUCUGUCACAUUGAUGAAACGCACCC ...........---....--...((...((((.........))))....)).... ( -2.00, z-score = 0.15, R) >consensus AAAGACAAUAGU_GAGUAGCGAUUCCCAUAUCAGUCACACUGAUGGAACGCACCC ..................(((.((((...(((((.....)))))))))))).... ( -7.20 = -8.44 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:07 2011