Locus 14168

Sequence ID dm3.chrX
Location 11,579,234 – 11,579,343
Length 109
Max. P 0.575014
window19504

overview

Window 4

Location 11,579,234 – 11,579,343
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 89.60
Shannon entropy 0.14322
G+C content 0.50746
Mean single sequence MFE -31.47
Consensus MFE -27.40
Energy contribution -27.73
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.17
SVM RNA-class probability 0.575014
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11579234 109 - 22422827
CAAUAGCACCAGCAAUGGCAGUGGCAGUGGCAGAUCCCCCCAACUGAUCUGCCAGAUCGCCGUAUUGUUGUGAUUAACCGACUGUGCUGUGUAAUCUUGGCCAGAUACU
..(((((((((....)))((((((...(((((((((.........)))))))))((((((.........))))))..)).))))))))))(((.(((.....)))))). ( -32.90, z-score =  -0.87, R)
>droSec1.super_36 268016 109 - 449511
CAAUAGCACCAGCAAUGGCAGUGGCAGUGGCAGAUCCCCCCAACUGAUCUGCCAGAUCGCCGUAUUGUUGUGAUUAACCGACUGUGCUGUGUAAUCUUGGCCAGAUACU
..(((((((((....)))((((((...(((((((((.........)))))))))((((((.........))))))..)).))))))))))(((.(((.....)))))). ( -32.90, z-score =  -0.87, R)
>droSim1.chrX 8907318 97 - 17042790
------------CAAUAGCACCAGCAAUGGCAGAUCCCCCCAACUGAUCUGCCAGAUCGCCGUAUUGUUGUGAUUAACCGACUGUGCUGUGUAAUCUUGGCCAGAUACU
------------..(((((((.(((..(((((((((.........)))))))))((((((.........))))))....).)))))))))(((.(((.....)))))). ( -28.60, z-score =  -2.55, R)
>consensus
CAAUAGCACCAGCAAUGGCAGUGGCAGUGGCAGAUCCCCCCAACUGAUCUGCCAGAUCGCCGUAUUGUUGUGAUUAACCGACUGUGCUGUGUAAUCUUGGCCAGAUACU
...............((((........(((((((((.........)))))))))((((((.((((.((((........)))).)))).)))..)))...))))...... (-27.40 = -27.73 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:35:06 2011