| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,554,124 – 11,554,217 |
| Length | 93 |
| Max. P | 0.756477 |
| Location | 11,554,124 – 11,554,217 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 94.62 |
| Shannon entropy | 0.08723 |
| G+C content | 0.42232 |
| Mean single sequence MFE | -17.47 |
| Consensus MFE | -15.94 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11554124 93 - 22422827 UAUAAGUAGAACAAUGGCAACAUGGCCCACACAAACACAAUGCCGGCAACAACUGAAUAAAGAAGAGCUGGACAUUUUCCAGAGAUAAGCCAG .............(((....)))(((...............)))(((.....((......)).....(((((.....)))))......))).. ( -16.76, z-score = -1.38, R) >droSim1.chrX 8882829 93 - 17042790 UAUAAGUAGAACAAUGGCAACAUGGCCCACACAAACACAAUGCCGGCAACAACUGAAUAAAGAAAAGCUGGACAUUUUCCAGAGAUAAGCCAG .............(((....)))(((...............)))(((.....((......)).....(((((.....)))))......))).. ( -16.76, z-score = -1.48, R) >droSec1.super_36 242643 93 - 449511 UAUAAGUAGAACAAUGGCAACAUGGCCCACACAAACACAAUGCCGGCAACAACUGAAUAAAGAAAAGCUGGACAUUUUCCAGAGAUAAGCCAG .............(((....)))(((...............)))(((.....((......)).....(((((.....)))))......))).. ( -16.76, z-score = -1.48, R) >droEre2.scaffold_4690 15117305 88 + 18748788 UAUAAGUAGAACAAUGGCAACAUGGGGCACA-----ACAAUGCCAGCAACAGCUGAAUAAAGAAAAGCUGGACAUUUUCCAGAGAUAAGCCAG ...........(.(((....))).)(((...-----.......((((....))))............(((((.....)))))......))).. ( -19.60, z-score = -2.09, R) >consensus UAUAAGUAGAACAAUGGCAACAUGGCCCACACAAACACAAUGCCGGCAACAACUGAAUAAAGAAAAGCUGGACAUUUUCCAGAGAUAAGCCAG .............(((....)))(((............(((((((((.....((......))....))))).))))............))).. (-15.94 = -16.00 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:58 2011