| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,551,971 – 11,552,029 |
| Length | 58 |
| Max. P | 0.899173 |
| Location | 11,551,971 – 11,552,029 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 85.34 |
| Shannon entropy | 0.23893 |
| G+C content | 0.43534 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -11.41 |
| Energy contribution | -11.22 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.899173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11551971 58 + 22422827 CUUAUUUUUGGCAUUUCAAGUCAACGGCGAACUGAAUUUGCCAGACAUUAUUGCCAAG .......((((((......(((...((((((.....)))))).))).....)))))). ( -15.90, z-score = -3.29, R) >droEre2.scaffold_4690 15115254 58 - 18748788 CUUGUUUUUGGUGGUUCAAGCCCACAGCGAAGUGAACUUCCCAGACAUUAUGGCAAAA .((((((((((.((((((.((.....))....))))))..)))))......))))).. ( -12.50, z-score = -0.16, R) >droSec1.super_36 240521 58 + 449511 CUUAUUUUUGGCGAUUCAAGCCCACGGUGAACUGAACUUGCCAGACAUUAAUGCAAAG ......((((((((((((.(((...)))....)))).))))))))............. ( -12.80, z-score = -1.71, R) >droSim1.chrX 8881023 58 + 17042790 CCUAUUUUUGGCGAUUCAAGCCCACGGCGAACUGAACUUGCCAGACAUUAAUGCAAAG ......((((((((((((.(((...)))....)))).))))))))............. ( -14.40, z-score = -2.46, R) >consensus CUUAUUUUUGGCGAUUCAAGCCCACGGCGAACUGAACUUGCCAGACAUUAAUGCAAAG ......((((((((((((.((.....))....)))).))))))))............. (-11.41 = -11.22 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:57 2011