| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,545,543 – 11,545,641 |
| Length | 98 |
| Max. P | 0.696124 |
| Location | 11,545,543 – 11,545,641 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.73 |
| Shannon entropy | 0.37973 |
| G+C content | 0.35134 |
| Mean single sequence MFE | -18.88 |
| Consensus MFE | -12.82 |
| Energy contribution | -13.82 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.696124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11545543 98 - 22422827 AAGAUAGCCGACCGCCACCUAGCGGCGGUUAUAUUAAAUACUUCUUACUUUUUACUGUAGGUUUCAUUUU-------------UUUUUCAAACCAACCAAAUGAUAUGUAU ...(((((((.((((......))))))))))).....((((..(((((........)))))..((((((.-------------...............))))))...)))) ( -21.19, z-score = -2.83, R) >droYak2.chrX 6631431 99 + 21770863 AAGAUACCCGAGCGCCACCUAGCGGUGGUUAUGUUCAAUACUCCUAACAUUAUAUUGCAAACUUCACUUA-----------UUUAAACCAACGAAAUCAAAUG-UGCAAAU .........((((((((((....))))))...))))..................(((((...........-----------......................-))))).. ( -14.61, z-score = -0.47, R) >droSec1.super_36 234684 111 - 449511 AAGAUAGCCGAGCGCCACCUAGCGGCGGCUAUUUUAAAUACUUCUUACUCUUUACUGUAGGCUUCUUUUUAUUUAUUCUUUUUUUAUUCAUACAAACCAAAUGAUAUGCAU ((((((((((..(((......))).))))))))))........(((((........))))).................................................. ( -20.30, z-score = -1.52, R) >droSim1.chrX 8874987 111 - 17042790 AAGAUAGCCGGGCGCCACCUAGCGGCGGCUAUUUUAAAUACUUCUUACUUUUUACUGUAGGCUUCUUUUUAUUUAUUCUUUUUUUAUUCAUACAAACCAAAUGAUAUGCAU (((((((((.(.(((......))).))))))))))........(((((........))))).................................................. ( -19.40, z-score = -0.82, R) >consensus AAGAUAGCCGAGCGCCACCUAGCGGCGGCUAUUUUAAAUACUUCUUACUUUUUACUGUAGGCUUCAUUUU___________UUUUAUUCAAACAAACCAAAUGAUAUGCAU ((((((((((..(((......))).))))))))))........(((((........))))).................................................. (-12.82 = -13.82 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:54 2011