| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,526,903 – 11,526,987 |
| Length | 84 |
| Max. P | 0.846028 |
| Location | 11,526,903 – 11,526,987 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 80.91 |
| Shannon entropy | 0.31847 |
| G+C content | 0.42816 |
| Mean single sequence MFE | -9.62 |
| Consensus MFE | -8.22 |
| Energy contribution | -8.46 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11526903 84 - 22422827 ACAUAUCUUUCCAUAUCCCAUAUC-------UUUCCGUCUCCAUCUGGCUGUUUUCAGUGCCAGCUAAGCGUUUCUAAAUGCAUUUAAAUG ........................-------.............(((((..........)))))....(((((....)))))......... ( -10.60, z-score = -1.54, R) >droSim1.chrX 8866575 79 - 17042790 -----UCUUUCCAUAUCCCACAUC-------UUUCCGUCUCCAUCUGCCUGUUUUCAGUGCCAGCUAAGCGUUUCUAAAUGCAUUUAAAUG -----...................-------.............(((((((....))).).)))....(((((....)))))......... ( -7.60, z-score = -1.31, R) >droSec1.super_36 226375 79 - 449511 -----UCUUUCCAUAUCCCAUAUC-------UUGUCGUCUCCACCUGGCUGUUUUCAGUGCCAGCUCGGCGUUUCUAAAUGCAUUUAAAUG -----...................-------.............(((((..........)))))....(((((....)))))......... ( -10.60, z-score = -0.61, R) >droYak2.chrX 6623099 75 + 21770863 ---------CCCAUAUCCCAUAUC-------UUACCAUCUCCAUCUGGCUGUUUUCAGUGCCAGCUAAGCGUUUCUAAACGCAUUUAAAUG ---------...............-------.............(((((..........)))))....(((((....)))))......... ( -12.40, z-score = -2.55, R) >droEre2.scaffold_4690 15100489 76 + 18748788 -----UCUAUCCGUAUCCCAUAUCCCUAUCGUCUCCAUCUCCAUCUGGCUGUUUUCAGUGCCAGCUAAGCGUUUCUAAAUG---------- -----.......................................(((((..........))))).................---------- ( -6.90, z-score = -0.74, R) >consensus _____UCUUUCCAUAUCCCAUAUC_______UUUCCGUCUCCAUCUGGCUGUUUUCAGUGCCAGCUAAGCGUUUCUAAAUGCAUUUAAAUG ............................................(((((..........)))))....(((((....)))))......... ( -8.22 = -8.46 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:54 2011