Locus 14157

Sequence ID dm3.chrX
Location 11,520,138 – 11,520,244
Length 106
Max. P 0.988941
window19485 window19486

overview

Window 5

Location 11,520,138 – 11,520,244
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 93.40
Shannon entropy 0.11357
G+C content 0.45584
Mean single sequence MFE -31.01
Consensus MFE -29.48
Energy contribution -29.88
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.95
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.96
SVM RNA-class probability 0.862331
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11520138 106 + 22422827
AGAUUGGGGG-AAAAAGGUGGCAAGAAGUCAGUCGGUGCUGGAUGGCAAUUAAAUGCAACCCUGCAUUGUCAUGCAAUUGACACCGAAAACACUCAGGUUUUUACCC
.....(((..-((((.((((((.....))...((((((.(.(((.(((....((((((....))))))....))).))).)))))))...))))....))))..))) ( -29.00, z-score =  -0.46, R)
>droSim1.chrX_random 3230360 106 + 5698898
AGAUUGGGGG-AAAAAGGUGGCAAGAAGUCGGUCGGUGCAGGAUGGCAAUUAAAUGCAACCCUGCAUUGUCAUGCAAUUGACACCGAAAACACUUAGGUUUUUACCC
......(((.-.....((((.(((...((..(.(((((((((...(((......)))...))))))))).)..))..))).))))((((((......)))))).))) ( -34.00, z-score =  -2.21, R)
>droSec1.super_36 219767 106 + 449511
AGAUUGGGGG-AAAAAGGUGGCAAGAAGUCAGUCGGUGCAGGAUGGCAAUUAAAUGCAACCCUGCAUUGUCAUGCAAUUGACACCGAAAACACUUAGGUUUUUACCC
......(((.-.....((((.(((...((..(.(((((((((...(((......)))...))))))))).)..))..))).))))((((((......)))))).))) ( -33.40, z-score =  -2.16, R)
>droYak2.chrX 6616198 103 - 21770863
AGAUUGGGGGGAAAAAGGUGGUAAGAAGU----CGGUGCAGGAUGGCAAUUAAAUGCAACCCUGCAUUGUCAUGCAAUUGACACCGAAAACACUCAGGUUUUUACCC
.....(((..((((..((((........(----(((((((((...(((......)))...)))))...((((......)))))))))...))))....))))..))) ( -32.50, z-score =  -2.09, R)
>droEre2.scaffold_4690 15093762 101 - 18748788
AGAUUGGGGA--AAAAGGUGGUACGAAGU----CGUUGCAGGAUGGCAAUUAAAUGCAACCCUGCAUUGUCAUGCAAUUGACACCGAAAACACUCAGGUUCUUACCU
....((((..--......(((((((....----)))((((((...(((......)))...))))))..((((......))))))))......))))(((....))). ( -26.14, z-score =  -0.60, R)
>consensus
AGAUUGGGGG_AAAAAGGUGGCAAGAAGUC_GUCGGUGCAGGAUGGCAAUUAAAUGCAACCCUGCAUUGUCAUGCAAUUGACACCGAAAACACUCAGGUUUUUACCC
......(((.......((((.(((...((....(((((((((...(((......)))...)))))))))....))..))).))))((((((......)))))).))) (-29.48 = -29.88 +   0.40)

alignment

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secondary structure

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dotplot

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Window 6

Location 11,520,138 – 11,520,244
Length 106
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 93.40
Shannon entropy 0.11357
G+C content 0.45584
Mean single sequence MFE -32.16
Consensus MFE -26.52
Energy contribution -27.04
Covariance contribution 0.52
Combinations/Pair 1.07
Mean z-score -3.22
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.34
SVM RNA-class probability 0.988941
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11520138 106 - 22422827
GGGUAAAAACCUGAGUGUUUUCGGUGUCAAUUGCAUGACAAUGCAGGGUUGCAUUUAAUUGCCAUCCAGCACCGACUGACUUCUUGCCACCUUUUU-CCCCCAAUCU
(((.(((((..((.(((((.(((((((....(((((....)))))((((.(((......))).)))).)))))))..))).....))))..)))))-.)))...... ( -31.40, z-score =  -2.41, R)
>droSim1.chrX_random 3230360 106 - 5698898
GGGUAAAAACCUAAGUGUUUUCGGUGUCAAUUGCAUGACAAUGCAGGGUUGCAUUUAAUUGCCAUCCUGCACCGACCGACUUCUUGCCACCUUUUU-CCCCCAAUCU
(((..((((..((((.(((.(((((((((......))))...(((((((.(((......))).))))))))))))..)))..))))......))))-..)))..... ( -32.60, z-score =  -3.38, R)
>droSec1.super_36 219767 106 - 449511
GGGUAAAAACCUAAGUGUUUUCGGUGUCAAUUGCAUGACAAUGCAGGGUUGCAUUUAAUUGCCAUCCUGCACCGACUGACUUCUUGCCACCUUUUU-CCCCCAAUCU
(((..((((..((((.(((.(((((((((......))))...(((((((.(((......))).))))))))))))..)))..))))......))))-..)))..... ( -33.50, z-score =  -3.60, R)
>droYak2.chrX 6616198 103 + 21770863
GGGUAAAAACCUGAGUGUUUUCGGUGUCAAUUGCAUGACAAUGCAGGGUUGCAUUUAAUUGCCAUCCUGCACCG----ACUUCUUACCACCUUUUUCCCCCCAAUCU
(((.(((((..((.(((...(((((((((......))))...(((((((.(((......))).)))))))))))----).....)))))..))))).)))....... ( -33.60, z-score =  -4.09, R)
>droEre2.scaffold_4690 15093762 101 + 18748788
AGGUAAGAACCUGAGUGUUUUCGGUGUCAAUUGCAUGACAAUGCAGGGUUGCAUUUAAUUGCCAUCCUGCAACG----ACUUCGUACCACCUUUU--UCCCCAAUCU
.((((.(((.(((((....)))))(((((......))))).((((((((.(((......))).))))))))...----..))).)))).......--.......... ( -29.70, z-score =  -2.65, R)
>consensus
GGGUAAAAACCUGAGUGUUUUCGGUGUCAAUUGCAUGACAAUGCAGGGUUGCAUUUAAUUGCCAUCCUGCACCGAC_GACUUCUUGCCACCUUUUU_CCCCCAAUCU
.(((((......((((....(((((((((......))))).((((((((.(((......))).))))))))))))...)))).)))))................... (-26.52 = -27.04 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:52 2011