| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,505,670 – 11,505,770 |
| Length | 100 |
| Max. P | 0.870267 |
| Location | 11,505,670 – 11,505,770 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 83.95 |
| Shannon entropy | 0.28064 |
| G+C content | 0.28280 |
| Mean single sequence MFE | -20.06 |
| Consensus MFE | -12.21 |
| Energy contribution | -12.17 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11505670 100 + 22422827 UCACACAAUUAUUCGGUUAGAUGGAAAAUCUCGACAACGAUUAUUCAAUACUAUCGAAUGAGUUGUAGGAUUUUC--UAACACAUGUAAAUACCAAAU--UUUA ..............(((....((((((((((..(((((..((((((.........))))))))))).))))))))--))((....))....)))....--.... ( -18.80, z-score = -1.68, R) >droSim1.chrX 8850608 103 + 17042790 UCACACAAUUAUUCGGUUAGAUGGAAAAUCUCGAAAAUGAUUAUUCAAUACUAUCGAAUAAGUUUUGGGAUUUUC-CUAACACAUUUAAAUACUAAACACAUUA ...............((((...((((((((((((((....((((((.........)))))).)))))))))))))-)))))....................... ( -21.60, z-score = -3.99, R) >droSec1.super_36 205209 101 + 449511 UCACACAAUUAUUCGGUUAGAUGGAAAAUCUCGAAAAUGAUUAUUCAAUACUAUCGAAUAAGUUUUGGGAUUUUC-CUAACACAUUUAAAUACUAAAU--AUUA ...............((((...((((((((((((((....((((((.........)))))).)))))))))))))-))))).................--.... ( -21.60, z-score = -3.69, R) >droYak2.chrX 6601797 100 - 21770863 UCACACAAUUAUGCGUUUUGAUGGAAAAUCUCGAAGUCGAUUAU-CGAUACUAUCGAAUGGGAUUUGAGAUUUUC-UUUACACAUUUUAAUACCAAAG--AGUA ..........(((.((......(((((((((((((..(.((..(-((((...))))))).)..))))))))))))-)..)).))).............--.... ( -20.60, z-score = -1.35, R) >droEre2.scaffold_4690 15079260 102 - 18748788 ACACACAGUAAUGCGUUUUGAUGGAAAAUCUCGAAAAUGAUUGUUCGAUACUAUCGAAUGAUUUUUGGAAUUUUUAUUUACAAAUUUAAAUACCAAAA--ACUA ..............(((((..((((((((..((((...(((..((((((...))))))..)))))))..)))))((((((......))))))))))))--)).. ( -17.70, z-score = -1.43, R) >consensus UCACACAAUUAUUCGGUUAGAUGGAAAAUCUCGAAAAUGAUUAUUCAAUACUAUCGAAUGAGUUUUGGGAUUUUC_CUAACACAUUUAAAUACCAAAU__AUUA ................((((((((((((((((.(((((..((((((.........)))))))))))))))))))).......)))))))............... (-12.21 = -12.17 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:49 2011