| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,496,154 – 11,496,251 |
| Length | 97 |
| Max. P | 0.957148 |
| Location | 11,496,154 – 11,496,251 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 75.31 |
| Shannon entropy | 0.39062 |
| G+C content | 0.32004 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -14.15 |
| Energy contribution | -14.03 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11496154 97 + 22422827 --------AAUCUCAACCAACAUUAUUCGUUGGAAAGU--UCAACUUGAACCCGGAGG-GGACUGUAUCAUUUUGAUAUUUUUGAAAUAUCAUGUUUGAUAUGUCACA----- --------..((((..(((((.......)))))...((--((.....))))...))))-.(((.((((((...(((((((.....)))))))....)))))))))...----- ( -25.20, z-score = -2.08, R) >droSim1.chrX 8841102 103 + 17042790 --AAUUAUCCUUUCAACCAACAUUAUUCGUUGCAAAGU--UCAACUUGAACUCGAAGG-GGACUGUAUCAUUUUGAUAUUUUUGAAAUAUCAUGUUUGAUAUGUCAGA----- --......((((((...((((.......))))...(((--((.....))))).)))))-)(((.((((((...(((((((.....)))))))....)))))))))...----- ( -26.40, z-score = -3.01, R) >droSec1.super_36 195646 103 + 449511 --AAUUAUCCUUUCAACCAACAUUAUUCGUUGCAAAGU--UCAACUUGAACUCGAAGG-GGACUGUAUCAUUUUGAUAUUUUUGAAAUAUCAUGUUUGAUAUGUCAGA----- --......((((((...((((.......))))...(((--((.....))))).)))))-)(((.((((((...(((((((.....)))))))....)))))))))...----- ( -26.40, z-score = -3.01, R) >droYak2.chrX 11088297 113 - 21770863 UUUGAAUUAUUUACCACUAACUUGGUUCGUUAGAAACUAAUGAAACGGAUCUUGAACUUGGUCCGUGUCAUUAUGAUAUCUUUGAAAAAUCAUGUUUGAUAUGAUAUGUCGCA ............((((......))))(((((((...)))))))...(((((........)))))(((.(((.((.(((((..(((....))).....))))).))))).))). ( -24.40, z-score = -1.69, R) >consensus __AAUUAUACUUUCAACCAACAUUAUUCGUUGCAAAGU__UCAACUUGAACUCGAAGG_GGACUGUAUCAUUUUGAUAUUUUUGAAAUAUCAUGUUUGAUAUGUCAGA_____ ................(((((.......)))))...........................(((.((((((...(((((((.....)))))))....)))))))))........ (-14.15 = -14.03 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:48 2011