| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,473,823 – 11,473,895 |
| Length | 72 |
| Max. P | 0.816256 |
| Location | 11,473,823 – 11,473,895 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 62.97 |
| Shannon entropy | 0.70432 |
| G+C content | 0.34327 |
| Mean single sequence MFE | -18.71 |
| Consensus MFE | -3.46 |
| Energy contribution | -5.30 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.62 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.18 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11473823 72 + 22422827 -UUCCGCAUAGUCGAAAAUGUUUAAGUUGAAUUGUCUUAC----GGACAGUGAGAUGAGUA--CGACUAUUUGGAAAUC -(((((.(((((((..(((......)))...(..((((((----.....))))))..)...--))))))).)))))... ( -22.00, z-score = -3.56, R) >droSec1.super_36 186996 72 + 449511 -UUCCGCACAGUCGAAAAUGUUUAAGUUGAAUUGUCUUAC----GGACAGUGAGAUGAGUA--CGACUAUUUGGAAAUC -(((((.(.(((((..(((......)))...(..((((((----.....))))))..)...--))))).).)))))... ( -17.90, z-score = -1.67, R) >droYak2.chrX 11080564 71 - 21770863 -UUCCGAACAGUCGAAA-UGUUGAAGUUGAAUUGUCUUAC----GGACAGUAAGAUGAGUA--CGACUAUUUGGAAAUC -(((((((.(((((.((-(......)))...(..((((((----.....))))))..)...--))))).)))))))... ( -21.70, z-score = -3.30, R) >droEre2.scaffold_4690 15060595 71 - 18748788 -UUCCACACAGUCGAAA-UGUUUAAGUUGAAUUGUCUUAC----GGACAGUAAGAUGAGUA--CGACUAUUUGGAAAUC -(((((.(.(((((.((-(......)))...(..((((((----.....))))))..)...--))))).).)))))... ( -18.50, z-score = -2.22, R) >droAna3.scaffold_13417 6463033 71 - 6960332 -UUUCUCUCAAUCAAAA-UGAUAAAUUUUAUUCGUCUUAC----GGAUAGUGAGAAAAAUA--AGAUUGAUUGAAAAUC -......(((((((...-......((((((((..((((((----.....))))))..))))--)))))))))))..... ( -17.30, z-score = -3.11, R) >dp4.chrXL_group1a 2821543 71 - 9151740 -CUAAAUGAAACGUGGG--CGCAAAGAUGAAUUAAAAAAA----GAAUAAUGAAAGUUACU-CCGAGUUUCAAUCAAUU -.....((((((((...--.))..................----((.((((....)))).)-)...))))))....... ( -9.00, z-score = -0.57, R) >droWil1.scaffold_180777 4703416 79 - 4753960 GGUCGAUUUAAUGUAGAGUUUUUAUUAUGGAUCUUCUGACCCUCGGGUCUUAAGAUUUAUAGUAGAUUUUUUGAAAAGC .............(((((..(((((((((((((((..((((....))))..)))))))))))))))..)))))...... ( -24.60, z-score = -4.00, R) >consensus _UUCCACACAGUCGAAA_UGUUUAAGUUGAAUUGUCUUAC____GGACAGUGAGAUGAGUA__CGACUAUUUGGAAAUC .(((((.(.(((((...........(((..(((((((.......)))))))..))).......))))).).)))))... ( -3.46 = -5.30 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:43 2011