| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,067,113 – 11,067,209 |
| Length | 96 |
| Max. P | 0.850321 |
| Location | 11,067,113 – 11,067,209 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 67.42 |
| Shannon entropy | 0.61522 |
| G+C content | 0.37028 |
| Mean single sequence MFE | -25.66 |
| Consensus MFE | -7.80 |
| Energy contribution | -8.83 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11067113 96 + 23011544 -------GGAAGAGAGUCGAAGAGCGGCGCUCUUUGGAUUUCUCUUCAGCUUGCAGCAGGUUAUUUUAUUUAUUUUCUGCUGAGUGAUUAUUAUCAUUAUGAA -------.(((((((.(((((((((...)))))))))...)))))))......(((((((..((.......))..)))))))((((((....))))))..... ( -33.60, z-score = -3.50, R) >droSim1.chr2L 10865405 96 + 22036055 -------GGAAGAGAGUCGAAGAGCGGCGCUCUUUGGAUUUCUCUUCAGCGUGCAGCAGGUUAUUUUAUUUAUUUUCUGCUGAGUGAUUAUUAUCAUUAUGAA -------.(((((((.(((((((((...)))))))))...)))))))......(((((((..((.......))..)))))))((((((....))))))..... ( -33.60, z-score = -3.48, R) >droSec1.super_3 6468651 96 + 7220098 -------GGAAGAGAGUCAAAGAGCGGCGCUCUUUGGAUUUCUCUUCAGCGUGCAGCAGGUUAUUUUAUUUAUUUUCUGCUGAGUGAUUAUUAUCAUUAUGAA -------.(((((((.(((((((((...)))))))))...)))))))......(((((((..((.......))..)))))))((((((....))))))..... ( -33.90, z-score = -3.87, R) >droYak2.chr2L 7462188 79 + 22324452 -------GAAAGAGAGUCGAAGAGCGGCGCUCUUU--AUUUCACUU-----UGAAGCAGGUUAUUU----------CUGCUGAGUGAUUAUUAUCAUUAUGAA -------.((((((.((((.....)))).))))))--...((((((-----...((((((.....)----------)))))))))))................ ( -24.10, z-score = -2.45, R) >droEre2.scaffold_4929 12263354 78 - 26641161 -------GGAAGAGAGUCUAAGAGCGGCGCUCUUU---UUGGUAUU-----UGAAGCAGGUUAUUU----------CUGCUGAGUGAUUAUUAUCAUUAUGAA -------(((((((.(((.......))).))))))---).......-----...((((((.....)----------))))).((((((....))))))..... ( -19.10, z-score = -0.81, R) >droAna3.scaffold_12916 12192887 88 + 16180835 UAAGAGAGGGAAAAUAUGUAAGAGAGGAGGCAUUU---CCUCUCUU--GUGUGCAGCAGGUUAUUU----------UCGUUAAGUGAUUAUUAUCAUUAUGAA ......((.(((((((..(((((((((((....))---))))))))--)((.....))...)))))----------)).)).((((((....))))))..... ( -21.90, z-score = -2.15, R) >droGri2.scaffold_15252 6145356 81 - 17193109 -----------GACAUUUUAAGAGUAA-----------UUAGUGGUUUGAAAGCAGCAGGUUGCUUGCUUUGUGUAACAAUCAACUGUUAUGAUAUUUAUUAA -----------.(((......((((((-----------(..((.(((....))).))..)))))))....)))((((((......))))))............ ( -13.40, z-score = 0.55, R) >consensus _______GGAAGAGAGUCGAAGAGCGGCGCUCUUU__AUUUCUCUU__GCGUGCAGCAGGUUAUUU__UUU_U_U_CUGCUGAGUGAUUAUUAUCAUUAUGAA ........((((((.(((.......))).))))))...................(((((.................))))).((((((....))))))..... ( -7.80 = -8.83 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:29 2011