| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,466,500 – 11,466,593 |
| Length | 93 |
| Max. P | 0.816761 |
| Location | 11,466,500 – 11,466,593 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 57.39 |
| Shannon entropy | 0.82730 |
| G+C content | 0.34099 |
| Mean single sequence MFE | -21.27 |
| Consensus MFE | -4.98 |
| Energy contribution | -4.74 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 2.10 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11466500 93 - 22422827 AAAGUGCAAUUUUUUAUAUCG--UAUAUUUUAAUUUGUAUAAAAGGUUUUGGCUUGAAAAGAGCCAG-AGCGAAUUACGUUCAAAAGAUGUGGCAU----- ...((((.(((((((....((--((..(((((.......))))).((((((((((.....)))))))-)))....))))...)))))))...))))----- ( -23.20, z-score = -2.99, R) >droSec1.super_36 179773 91 - 449511 AAAGAGCUAGUUUUCA-AUCG--UAUAUUUGAAUUUCAAUAAAAGGUUUUGGCUUGAAAAGAGCCAG-AGCGAAUUACGUUC-AAAGAUGUGGCAU----- .....(((((((((..-..((--((...(((.....)))......((((((((((.....)))))))-)))....))))...-.))))).))))..----- ( -22.60, z-score = -2.46, R) >droSim1.chrX 8832642 92 - 17042790 AAAGUGCUAGUUUUCA-AUCG--UAUAUUUGAAUUUCAAUAAAAGGUUUUGGCUUGAAAAGAGCCAG-AGCGAAUUACGUUCAAAAGAUGUGGCAU----- ...(((((((((((..-..((--((...(((.....)))......((((((((((.....)))))))-)))....)))).....))))).))))))----- ( -23.40, z-score = -2.64, R) >droEre2.scaffold_4690 15053399 93 + 18748788 -AAAUUUGUAUUUUCCUAUCG--UACUUAUGAAUUUGAAUAAAAGAUUUUGGCUUGAAAAUAGCCGGAAGCGUAUGACAUUGUAAAGAUGUGGCAU----- -....(..((((((..(((((--(((((((........))))..(.((((((((.......)))))))).)))))))...))..))))))..)...----- ( -16.10, z-score = -0.39, R) >droYak2.chrX 11073351 84 + 21770863 ---GAGCCAUUUUCCA--------AUAAAUUAA-UAAAAUGAAUAAAUUUGGCUUGAAAGAGGCUAUAAGCGUAUUACGUUGAAAAGAAGUGGCAU----- ---..((((((((...--------.........-...............((((((.....))))))..((((.....)))).....))))))))..----- ( -17.10, z-score = -2.01, R) >droAna3.scaffold_13417 6454839 99 + 6960332 -UAAUAUUUUUUUGAAAAUCAGUUUUUUUUCAAGUAAAAAAAAAAUAAGUGGCAUCUCUGUUGACAGUGUUGAAAAAC-UUCAUCAGGAGAGACUUCCCAG -.....((((((((((((........)))))))).))))..........(((..(((((.((((....(((....)))-....)))).)))))....))). ( -19.80, z-score = -1.35, R) >droGri2.scaffold_15081 2951116 83 - 4274704 AAAGCGUAUCGAUGACUGUCA--UCGAUUGCAAUU---GCGAAUACAACUCGUGCAGAAAGUGAC---GCCGAAUAACGGCGCAAUCGCGC---------- ...(((.(((((((.....))--))))))))....---((((.(((.....))).......((.(---((((.....))))))).))))..---------- ( -26.70, z-score = -1.39, R) >consensus AAAGUGCUAUUUUUCA_AUCG__UAUAUUUGAAUUUAAAUAAAAGGUUUUGGCUUGAAAAGAGCCAG_AGCGAAUUACGUUCAAAAGAUGUGGCAU_____ .................................................((((((.....))))))..((((.....)))).................... ( -4.98 = -4.74 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:42 2011