| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,455,642 – 11,455,717 |
| Length | 75 |
| Max. P | 0.566947 |
| Location | 11,455,642 – 11,455,717 |
|---|---|
| Length | 75 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 71.05 |
| Shannon entropy | 0.47772 |
| G+C content | 0.36048 |
| Mean single sequence MFE | -13.52 |
| Consensus MFE | -10.40 |
| Energy contribution | -9.72 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.53 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11455642 75 - 22422827 UCAGCUAGUGACGAAUGCUUCCCUAGAAGCAGUAAG-AUUUGUGAUA-----UGUACACACGAAUACUAACAGUUAAACUA------------ ........((((...((((((....))))))((.((-(((((((...-----......))))))).)).)).)))).....------------ ( -16.00, z-score = -1.63, R) >droEre2.scaffold_4690 15042576 83 + 18748788 UCAGAUAGUGACGAAUGCUUCCACAGAAGCAGUAA--AAAUGUGGAAUGUA-CAAACAUACAAAUGCUAG-AAUUAUAAUGCUACUA------ .....(((((.....((((((((((..........--...))))))).)))-.............((...-.........)))))))------ ( -11.52, z-score = 0.19, R) >droYak2.chrX 11062560 79 + 21770863 -CAGCUAGUGACGAAUGCUCCUACAGAGGCAAUAAACAAAUGUGAAAUGCA-CAUACAUAGAAAUACUGGGAAUCAAUCUA------------ -...((((((.....(((..(....)..)))........(((((.....))-))).........))))))...........------------ ( -13.40, z-score = -0.77, R) >droSec1.super_36 169063 80 - 449511 UCAGCUAGUGACGAAUGCUUCCCCAGAAGCAGUAAA-AUAUGUGAUAUGUACUGUACGCACAAAUACUAACAAUCAGUUUA------------ ...(.(((((.....((((((....)))))).....-...((((.(((.....)))))))....))))).)..........------------ ( -12.80, z-score = -0.10, R) >droSim1.chrX 8822560 92 - 17042790 UCAGCUAGUGACGAAUGCUUCCCCAGAAGCAGUAAA-AUAUGUGAUAUGUACUGUACACACAAAUACUAACUAUUAACUAACUAAUAAGUCUA ..((.(((((.....((((((....)))))).....-...((((.(((.....)))))))....))))).))..................... ( -13.90, z-score = -0.35, R) >consensus UCAGCUAGUGACGAAUGCUUCCCCAGAAGCAGUAAA_AUAUGUGAUAUGUA_UGUACACACAAAUACUAACAAUUAAACUA____________ .....(((((.....((((((....)))))).........((((............))))....)))))........................ (-10.40 = -9.72 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:40 2011