| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,438,287 – 11,438,401 |
| Length | 114 |
| Max. P | 0.862923 |
| Location | 11,438,287 – 11,438,401 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 85.04 |
| Shannon entropy | 0.23453 |
| G+C content | 0.53981 |
| Mean single sequence MFE | -24.41 |
| Consensus MFE | -19.91 |
| Energy contribution | -19.35 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11438287 114 + 22422827 UCGGUGUUUGCCUUGUGUUGUUAUUUGCAUAACAAGAGGCUUGUCUCUCCCCAUCCUCCGCCUCCAGGGGCCCCAUCCUCUG-UGGCUCCAUCCCUCCAUAUCACCAUCCAACGU ..((((...(((((.((((((.......)))))).)))))...................(((..((((((......))))))-.)))...............))))......... ( -29.80, z-score = -2.19, R) >droSim1.chrX 8816410 104 + 17042790 UCGGUGUUUGCCUUGUGUUGUUAUUUGCAUAACAAGAGGCUUGUCUC--CCCAUCCUCCGCCUCCAGGGACCCCAUCCUCUG-UGCCUCCAU--------UCCACCAUCCUCCUU ..((((...(((((.((((((.......)))))).))))).......--..........((...((((((.....))).)))-.))......--------..))))......... ( -23.00, z-score = -1.65, R) >droSec1.super_36 152686 112 + 449511 UCGGUGUUUGCCUUGUGUUGUUAUUUGCAUAACAAGAGGCUUGUCUC--CCCGUCCUCCGCCUCCAGGGACCCCAUCCUCUG-UGCCUCCAUCCCUCCAUUCCACCAUCCUCCUU ..((((...(((((.((((((.......)))))).))))).......--..........((...((((((.....))).)))-.))................))))......... ( -23.00, z-score = -1.59, R) >droYak2.chrX 11046673 107 - 21770863 UCGGUGCUUGUCUUGUGUUGUUAUUUGCAUAACAAGAGGCUUGUCUC--CUCAUCCUCCGCCUCCAGGGAUCCCAUCCCAUCCUCCCUUCAUC------UCCCACCAUUCUCGUG ..((((.((((..((((........))))..))))(((((.......--..........)))))..(((((...)))))..............------...))))......... ( -21.83, z-score = -1.83, R) >consensus UCGGUGUUUGCCUUGUGUUGUUAUUUGCAUAACAAGAGGCUUGUCUC__CCCAUCCUCCGCCUCCAGGGACCCCAUCCUCUG_UGCCUCCAUC______UUCCACCAUCCUCCUU ..((((...(((((.((((((.......)))))).)))))..........................((((.....)))).......................))))......... (-19.91 = -19.35 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:31 2011