| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,065,295 – 11,065,386 |
| Length | 91 |
| Max. P | 0.976582 |
| Location | 11,065,295 – 11,065,386 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 92.97 |
| Shannon entropy | 0.11290 |
| G+C content | 0.50953 |
| Mean single sequence MFE | -18.06 |
| Consensus MFE | -16.44 |
| Energy contribution | -16.70 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11065295 91 - 23011544 UUUUUUCA--UUUUUGCGUUUGCUUUUGGGCCUGAUAAGCGAACUCACCUUUGUCGCCCCCUCGCCC-UGCCCAAAUGCCACCCACUUCACUCU ........--.....(((((((.....((((.......((((.(........)))))......))))-....)))))))............... ( -18.42, z-score = -2.30, R) >droSim1.chr2L 10863622 91 - 22036055 UUUUUUCA--UUUUUGCGUUUGCUUUUGGGCCUGAUAAGCGCACUCACCUUCGUCGCCCCCUCGCCC-ACUCCAAAUGCCACCCACUUCACUCU ........--.....(((((((....(((((.......(((.((........)))))......))))-)...)))))))............... ( -18.72, z-score = -2.91, R) >droSec1.super_3 6466825 91 - 7220098 UUUUUUCA--UUUUUGCGUUUGCUUUUGGGCCUGAUAAGCGCACUCACCUUCGUCGCCCCCUCGCCC-ACUCCAAAUGCCACCCACUUCAAUCU ........--.....(((((((....(((((.......(((.((........)))))......))))-)...)))))))............... ( -18.72, z-score = -2.75, R) >droYak2.chr2L 7460299 94 - 22324452 UUUUUUCAUUUUUUUGCGUUUGCUUUUGGGCCUGAUAAGCGCACUCACCUUCGCCGCCCCUUCGCCCUCCCCCAAAUGCCACCCACUUCACUUU ...............(((((((.....((((..((...((((..........).)))....)))))).....)))))))............... ( -16.40, z-score = -1.75, R) >consensus UUUUUUCA__UUUUUGCGUUUGCUUUUGGGCCUGAUAAGCGCACUCACCUUCGUCGCCCCCUCGCCC_ACCCCAAAUGCCACCCACUUCACUCU ...............(((((((.....((((.......(((.((........)))))......)))).....)))))))............... (-16.44 = -16.70 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:28 2011