Locus 14134

Sequence ID dm3.chrX
Location 11,395,987 – 11,396,104
Length 117
Max. P 0.629452
window19449

overview

Window 9

Location 11,395,987 – 11,396,104
Length 117
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 83.57
Shannon entropy 0.24679
G+C content 0.39243
Mean single sequence MFE -30.93
Consensus MFE -25.19
Energy contribution -25.63
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.43
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.29
SVM RNA-class probability 0.629452
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11395987 117 + 22422827
UACAAAAGUCAAAAUAAAAAGCCGUGGCCUGUUGACAUUGACAUGGCCAUGGGCAACAAAAGGAGUAAUUUUUUGGCUUGAU-UCAAAAAAAAAUUUUUUUUUUACUGCGGGGGAUGU
.......(((...........((((((((((((......)))).))))))))(((..(((((((((..((((((((......-))))))))..)))))))))....)))....))).. ( -30.30, z-score =  -1.71, R)
>droEre2.scaffold_4690 14987657 118 - 18748788
UGCAAAAGUCCAAAUAAAAAGCCGUGGCCUGUUGACAUUGACAUGGCCAUGGGCAACAAAAGGAGUCAUUUUUUGGCUUUAUAUUUUUUUUCGUUUUCCUUUUUUCUGCGGGGGAUGU
.......((((..........((((((((((((......)))).))))))))(((..(((((((((((.....))))...................)))))))...)))...)))).. ( -33.10, z-score =  -1.17, R)
>droYak2.chrX 11010513 100 - 21770863
UGCAAAAGUCAAAAUAAAAAGCCGUGGCCUGUUGACAUUGACAUGGCCAUGGGCAACAAAAGGAGUCAUUUUUUGGCUUUAU-U-----------------UUUUCUGCGGGGGAUGU
.......(((...........((((((((((((......)))).))))))))(((..(((((((((((.....))))))..)-)-----------------)))..)))....))).. ( -29.40, z-score =  -1.41, R)
>consensus
UGCAAAAGUCAAAAUAAAAAGCCGUGGCCUGUUGACAUUGACAUGGCCAUGGGCAACAAAAGGAGUCAUUUUUUGGCUUUAU_U__________UUU__UUUUUUCUGCGGGGGAUGU
.(((((((((((((.......((((((((((((......)))).))))))))((..(....)..))....)))))))))).....................((..(....)..))))) (-25.19 = -25.63 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:22 2011