| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,391,110 – 11,391,163 |
| Length | 53 |
| Max. P | 0.925584 |
| Location | 11,391,110 – 11,391,163 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 95.85 |
| Shannon entropy | 0.07280 |
| G+C content | 0.49434 |
| Mean single sequence MFE | -14.38 |
| Consensus MFE | -14.70 |
| Energy contribution | -14.38 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.33 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11391110 53 + 22422827 UCUGCAAGUCGAAAUGCCAAAAAAUAUUGGCCAAUUGGGCGACGCACAUACAC ..(((..((((.((((((((......)))))..)))...)))))))....... ( -11.90, z-score = -1.37, R) >droSim1.chrX 8793242 53 + 17042790 UCUGCAAGCCGGAAUGCCAAAAAAUGUUGGCCAAUUGGGCGACGCACAUACAC ..(((..(((.((..(((((......)))))...)).)))...)))....... ( -15.00, z-score = -1.39, R) >droSec1.super_36 112980 53 + 449511 UCUGCAAGCCGGAAUGCCAAAAAAUGUUGGCCAAUUGGGCGACGCACAUACAC ..(((..(((.((..(((((......)))))...)).)))...)))....... ( -15.00, z-score = -1.39, R) >droYak2.chrX 11005701 53 - 21770863 UCUGCAAGCCGGAAUGCCAAAAAAUGUUGGCCAAUUGGGCGACGCACGUAUAC ..(((..(((.((..(((((......)))))...)).)))...)))....... ( -15.00, z-score = -1.09, R) >droEre2.scaffold_4690 14982967 53 - 18748788 UCUGCAAGCCGGAAUGCCAAAAAAUGUUGGCCAAUUGGGCGACGCACAUAUAC ..(((..(((.((..(((((......)))))...)).)))...)))....... ( -15.00, z-score = -1.44, R) >consensus UCUGCAAGCCGGAAUGCCAAAAAAUGUUGGCCAAUUGGGCGACGCACAUACAC ..(((..(((.((..(((((......)))))...)).)))...)))....... (-14.70 = -14.38 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:21 2011