| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,359,023 – 11,359,091 |
| Length | 68 |
| Max. P | 0.977401 |
| Location | 11,359,023 – 11,359,091 |
|---|---|
| Length | 68 |
| Sequences | 4 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 97.06 |
| Shannon entropy | 0.04772 |
| G+C content | 0.41544 |
| Mean single sequence MFE | -13.18 |
| Consensus MFE | -12.52 |
| Energy contribution | -12.78 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.977401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11359023 68 + 22422827 GUCAUUUUCAAUUUUCCGUCGCCAAGGAAAUUCCAUUGCAUUUUCCGCCAGACGGACACUAUUUACAU ..............((((((.....(((((...........)))))....))))))............ ( -14.20, z-score = -3.13, R) >droEre2.scaffold_4690 14951828 68 - 18748788 GUCAUUUUCCAUUUUGCGUCGCCAAGGAAAUUCCAUUGCAUUUUCCGCCAGACGGACACUAUUUACAU (((......(.....)((((.....(((((...........)))))....)))))))........... ( -10.10, z-score = -0.64, R) >droYak2.chrX 10977308 68 - 21770863 GUCAUUUAGAAUUUUCCGUCGCCAAGGAAAUUCCAUUGCAUUUUCCGCCAGACGGACACUAUUUACAU ..............((((((.....(((((...........)))))....))))))............ ( -14.20, z-score = -2.70, R) >droSim1.chrX_random 3177947 68 + 5698898 GUCAUUUUCAAUUUUCCGUCGCCAAGGAAAUUCCAUUGCAUUUUCCGCCAGACGGACACUAUUUACAU ..............((((((.....(((((...........)))))....))))))............ ( -14.20, z-score = -3.13, R) >consensus GUCAUUUUCAAUUUUCCGUCGCCAAGGAAAUUCCAUUGCAUUUUCCGCCAGACGGACACUAUUUACAU ..............((((((.....(((((...........)))))....))))))............ (-12.52 = -12.78 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:17 2011