| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,358,219 – 11,358,269 |
| Length | 50 |
| Max. P | 0.979043 |
| Location | 11,358,219 – 11,358,269 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 74.72 |
| Shannon entropy | 0.42315 |
| G+C content | 0.44496 |
| Mean single sequence MFE | -11.35 |
| Consensus MFE | -11.15 |
| Energy contribution | -9.93 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.979043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11358219 50 + 22422827 -UACAUGUGUCAA-----GUGGCACGAGAUACAAAUUAUUUUUGGCCAGCGGCCAG- -....((((((..-----..))))))................(((((...))))).- ( -13.40, z-score = -1.91, R) >droSim1.chrX_random 3177142 50 + 5698898 -UACAUGUGUCAA-----GUGGCACGAGAUACAAAUUAUUUUUGGCCAGCGGCCAG- -....((((((..-----..))))))................(((((...))))).- ( -13.40, z-score = -1.91, R) >droSec1.super_36 80029 50 + 449511 -UACAUGUGUCAA-----GUGGCACGAGAUACAAAUUAUUUUUGGCCAGCGGCCAG- -....((((((..-----..))))))................(((((...))))).- ( -13.40, z-score = -1.91, R) >droYak2.chrX 10976448 50 - 21770863 -UACAUGUGUCAA-----GUGGCACGAGAUACAAAUUAUUUUUGGCCAGCGGCCAG- -....((((((..-----..))))))................(((((...))))).- ( -13.40, z-score = -1.91, R) >dp4.chrXL_group1e 10726019 54 - 12523060 -UACAUGUGUCAAACCUCAAGAUACAAGACACAAACU--UUCGGGCCAUCCAUUCGU -....((((((................))))))....--...((.....))...... ( -6.99, z-score = -0.35, R) >droPer1.super_18 1313570 52 - 1952607 UAACAUGUGUCAA-CCUCAAGAUACAAGACACAAACU--UUCGG-UCAUC-AUUCGG .....((((((..-......)))))).(((.(.....--...))-))...-...... ( -7.50, z-score = -1.08, R) >consensus _UACAUGUGUCAA_____GUGGCACGAGAUACAAAUUAUUUUUGGCCAGCGGCCAG_ .....(((((((.......)))))))...............(((((.....))))). (-11.15 = -9.93 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:17 2011