| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,064,120 – 11,064,211 |
| Length | 91 |
| Max. P | 0.580214 |
| Location | 11,064,120 – 11,064,211 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 73.27 |
| Shannon entropy | 0.48704 |
| G+C content | 0.40710 |
| Mean single sequence MFE | -19.47 |
| Consensus MFE | -13.04 |
| Energy contribution | -12.96 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11064120 91 + 23011544 AUAAUUUGAUCUUUUGACAGAUCAAA------GAUCGCUGCU------UGAACCU-AAGGUUAAUCACUGACCGCAGCA------CCGCACAAUAUGGCUGUUAUUUCUG- ....((((((((......))))))))------....((((((------((....)-))(((((.....))))))))))(------(.((........)).))........- ( -19.80, z-score = -1.43, R) >droWil1.scaffold_180830 27577 95 + 119711 AGAAAGAGAUCUCUGAGAAGAGAUCA------GAUAGCU---------UGAACUU-GAGGUUAAUCUUGGACCACGCUGUGGCAAAUAAAUAAAUAGUUAAAAGUAUUUUU .......(((((((....))))))).------....(((---------(.((((.-..((((.......))))..((....))............))))..))))...... ( -18.40, z-score = -0.56, R) >droAna3.scaffold_12916 12189868 110 + 16180835 UUUGUGUGAUCUCUUGACAGAUCAACUGGCCCGAUAACUGCCCUGGCCUGAACUUUAAGGUUAAAUGAUGACCGCAACAGCACCACCGCAGCAGCAAGCAGUGUUUUCUG- .((((.((((((......))))))...((((.(.........).))))..........(((((.....)))))))))(((...(((.((........)).)))....)))- ( -22.00, z-score = 1.40, R) >droEre2.scaffold_4929 12260385 91 - 26641161 AUAAUUUGAUCUUUUGACAGAUCAAA------GAUCGCUGCU------UGAACCU-AAGGUUAAUCACUGACCACAGCA------CCGCACAAUAUGGCUGUUAUUUCUG- ....((((((((......))))))))------..........------.(((...-..(((((.....)))))(((((.------............)))))...)))..- ( -16.22, z-score = -0.53, R) >droYak2.chr2L 7459188 91 + 22324452 AUAAUUUGAUCUUUUGACAGAUCAAA------GAUCGCUGCU------UGAACCA-AAGGUUAAUCACUGACCGCAGCA------CCGCACAAUAUGGCUGUUAUUUCUG- ....((((((((......))))))))------....((((((------((...))-).(((((.....))))))))))(------(.((........)).))........- ( -20.30, z-score = -1.48, R) >droSec1.super_3 6465667 91 + 7220098 AUAAUUUGAUCUUUUGACAGAUCAAA------GAUCGCUGCU------UGAACCU-AAGGUUAAUCACUGACCGCAGCA------CCGCACAAUAUGGCUGUUAUUUCUG- ....((((((((......))))))))------....((((((------((....)-))(((((.....))))))))))(------(.((........)).))........- ( -19.80, z-score = -1.43, R) >droSim1.chr2L 10862468 91 + 22036055 AUAAUUUGAUCUUUUGACAGAUCAAA------GAUCGCUGCU------UGAACCU-AAGGUUAAUCACUGACCGCAGCA------CCGCACAAUAUGGCUGUUAUUUCUG- ....((((((((......))))))))------....((((((------((....)-))(((((.....))))))))))(------(.((........)).))........- ( -19.80, z-score = -1.43, R) >consensus AUAAUUUGAUCUUUUGACAGAUCAAA______GAUCGCUGCU______UGAACCU_AAGGUUAAUCACUGACCGCAGCA______CCGCACAAUAUGGCUGUUAUUUCUG_ .....(((((((......)))))))...........(((((.........((((....))))...........))))).........((........))............ (-13.04 = -12.96 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:27 2011