Locus 14129

Sequence ID dm3.chrX
Location 11,350,948 – 11,350,999
Length 51
Max. P 0.966868
window19440 window19441

overview

Window 0

Location 11,350,948 – 11,350,999
Length 51
Sequences 3
Columns 51
Reading direction forward
Mean pairwise identity 92.81
Shannon entropy 0.10310
G+C content 0.46052
Mean single sequence MFE -8.50
Consensus MFE -7.80
Energy contribution -8.13
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.38
SVM RNA-class probability 0.666566
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11350948 51 + 22422827
UUGAAUCCUCCGAUCCUGAUGUCGAAAUCAAACCACCAGUGAAGGAAAUCG
........(((..(((((.((............)).))).)).)))..... (  -5.70, z-score =   0.56, R)
>droSim1.chrX 8760720 50 + 17042790
UUGAAUCCUCCGAUGCUGAUGACCAAAUCAAACCACCAGCGAAGGAAAUC-
........(((..(((((.((............)).)))))..)))....- (  -9.90, z-score =  -2.31, R)
>droSec1.super_36 72951 51 + 449511
UUGAAUCCUCCGAUGCUGAUGACCAAAUCAAACCACCAGCGAAGGAAAUCC
........(((..(((((.((............)).)))))..)))..... (  -9.90, z-score =  -2.34, R)
>consensus
UUGAAUCCUCCGAUGCUGAUGACCAAAUCAAACCACCAGCGAAGGAAAUC_
........(((..(((((.((............)).)))))..)))..... ( -7.80 =  -8.13 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 11,350,948 – 11,350,999
Length 51
Sequences 3
Columns 51
Reading direction reverse
Mean pairwise identity 92.81
Shannon entropy 0.10310
G+C content 0.46052
Mean single sequence MFE -17.67
Consensus MFE -14.93
Energy contribution -15.60
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.67
Structure conservation index 0.85
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.77
SVM RNA-class probability 0.966868
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11350948 51 - 22422827
CGAUUUCCUUCACUGGUGGUUUGAUUUCGACAUCAGGAUCGGAGGAUUCAA
.((..((((((.((((((..(((....)))))))))....)))))).)).. ( -15.20, z-score =  -1.47, R)
>droSim1.chrX 8760720 50 - 17042790
-GAUUUCCUUCGCUGGUGGUUUGAUUUGGUCAUCAGCAUCGGAGGAUUCAA
-((..(((((((((((((..(......)..)))))))...)))))).)).. ( -18.90, z-score =  -3.40, R)
>droSec1.super_36 72951 51 - 449511
GGAUUUCCUUCGCUGGUGGUUUGAUUUGGUCAUCAGCAUCGGAGGAUUCAA
.((..(((((((((((((..(......)..)))))))...)))))).)).. ( -18.90, z-score =  -3.14, R)
>consensus
_GAUUUCCUUCGCUGGUGGUUUGAUUUGGUCAUCAGCAUCGGAGGAUUCAA
.((..(((((((((((((..(......)..)))))))...)))))).)).. (-14.93 = -15.60 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:16 2011