| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,349,105 – 11,349,156 |
| Length | 51 |
| Max. P | 0.609257 |
| Location | 11,349,105 – 11,349,156 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 94.90 |
| Shannon entropy | 0.08982 |
| G+C content | 0.46275 |
| Mean single sequence MFE | -13.64 |
| Consensus MFE | -12.52 |
| Energy contribution | -12.88 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11349105 51 + 22422827 GAUAAUGGAUAUUUUUGAUAUGGUCAAAGCGGCGCCGCCGCCGCAAACUAU ....((((.....((((((...))))))((((((....))))))...)))) ( -14.90, z-score = -1.34, R) >droSim1.chrX 8758256 51 + 17042790 GAUAAUGGAUAUUUUUGAUAUGGUCAAAGCGGCGCCGCCACCGCAAACUAU ....((((.....((((((...))))))((((........))))...)))) ( -9.50, z-score = 0.07, R) >droSec1.super_36 71056 51 + 449511 GAUAAUGGAUAUUUUUGAUAUGGUCAAAGCGGCGCCGCCGCCGCAAACUAU ....((((.....((((((...))))))((((((....))))))...)))) ( -14.90, z-score = -1.34, R) >droYak2.chrX 10967178 51 - 21770863 AAUAAUGGAUAUUUUUGAUAUGGUCAAAGCGGCGCCGCCGCCCCAAACCAU ....((((.....((((((...))))))(((((...)))))......)))) ( -13.10, z-score = -0.93, R) >droEre2.scaffold_4690 14942122 51 - 18748788 GAUAAUGGAUAUUUUUGAUAUAGUCAAAGCGGCACCGCCGCCGCAAACCAU ....((((.....((((((...))))))(((((......)))))...)))) ( -15.80, z-score = -3.11, R) >consensus GAUAAUGGAUAUUUUUGAUAUGGUCAAAGCGGCGCCGCCGCCGCAAACUAU ....((((.....((((((...))))))((((((....))))))...)))) (-12.52 = -12.88 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:14 2011