| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,345,549 – 11,345,599 |
| Length | 50 |
| Max. P | 0.880524 |
| Location | 11,345,549 – 11,345,599 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 98.67 |
| Shannon entropy | 0.01837 |
| G+C content | 0.35333 |
| Mean single sequence MFE | -8.27 |
| Consensus MFE | -8.09 |
| Energy contribution | -7.87 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11345549 50 + 22422827 UUUUAUGUUGUGGAAGCUAUUGCCUCUGAUUUUACAUAACGGCACUUUUU ..((((((..((((.((....)).)))).....))))))........... ( -7.40, z-score = -0.73, R) >droSim1.chrX 8754394 50 + 17042790 UUUUAUGCUGUGGAAGCUAUUGCCUCUGAUUUUACAUAACGGCACUUUUU .....(((((((((.((....)).)))...........))))))...... ( -8.70, z-score = -1.16, R) >droSec1.super_36 67504 50 + 449511 UUUUAUGCUGUGGAAGCUAUUGCCUCUGAUUUUACAUAACGGCACUUUUU .....(((((((((.((....)).)))...........))))))...... ( -8.70, z-score = -1.16, R) >consensus UUUUAUGCUGUGGAAGCUAUUGCCUCUGAUUUUACAUAACGGCACUUUUU .....(((((((((.((....)).)))...........))))))...... ( -8.09 = -7.87 + -0.22)
| Location | 11,345,549 – 11,345,599 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 98.67 |
| Shannon entropy | 0.01837 |
| G+C content | 0.35333 |
| Mean single sequence MFE | -8.37 |
| Consensus MFE | -8.12 |
| Energy contribution | -7.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11345549 50 - 22422827 AAAAAGUGCCGUUAUGUAAAAUCAGAGGCAAUAGCUUCCACAACAUAAAA ...........((((((.......(((((....)))))....)))))).. ( -7.70, z-score = -1.71, R) >droSim1.chrX 8754394 50 - 17042790 AAAAAGUGCCGUUAUGUAAAAUCAGAGGCAAUAGCUUCCACAGCAUAAAA .....((((.((..((......))(((((....))))).)).)))).... ( -8.70, z-score = -1.65, R) >droSec1.super_36 67504 50 - 449511 AAAAAGUGCCGUUAUGUAAAAUCAGAGGCAAUAGCUUCCACAGCAUAAAA .....((((.((..((......))(((((....))))).)).)))).... ( -8.70, z-score = -1.65, R) >consensus AAAAAGUGCCGUUAUGUAAAAUCAGAGGCAAUAGCUUCCACAGCAUAAAA ...........((((((.......(((((....)))))....)))))).. ( -8.12 = -7.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:14 2011